SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene129039

Length: 501 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene129039
AAATTACTCTGGAGGGAGCCTCCAAAAATATACGCGCTAGGCCATGTTCCTTACGATGGCTAATTTATTTAAGTCGTAAACTTGGCATCGACTGGATTGTTGAGTGCAAAACCCAGAAGTCCATAGCATTAGAATCGGGGAGGATGAAATACGTGCTGGTGTCTGGTGGAGTGGTCAGTGGGCTGGGCAAGGGAGTCACAGCTTCCAGCATTGGAGTGGTGTTGAAGGCATGCGGACTTCGAGTTACCTCTATTAAAATCGATCCATATTTGAATACAGATGCGGGGACCATGTCTCCCTTTGAGCATGGAGAAGTTTTTGTGCTTGACGATGGTGGCGAGGTTGATTTGGATCTTGGTAACTATGAGCGCTTTTTAGATGTGACATTGACTCGAAATAACAATATCACCACTGGGAAGATATATCAGTCCGTTATCGACAATGAACGGAGGGAAACTACCTAGGAAAGACTGTAACAGGTAATTCCACATATTACAGATG

Ace file of the UniGene sp_v3.0_unigene129039 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative CTP synthase [Arabidopsis thaliana] gb\|AAM98192.1\| CTP synthase-like protein [Arabidopsis thaliana] gb\|AEE82126.1\| putative CTP synthase [Arabidopsis thaliana]	-	-	6.0e-29	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Sma3	CTP synthase	-	-	4.219e-35	-

Source	ECs	Term	Type	e value	Identity
Sma3	CTP synthase.	EC:6.3.4.2	-	4.623e-18	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Pyrimidine metabolism	00240		4.623e-18	%
Sma3	Metabolic pathways	01100		4.623e-18	%

Source	Gene names
Sma3	AT4g02120; AT4g20320; At1g30820; At2g34890; At3g12670; At4g02120; At4g20320; CHLREDRAFT_176554; F1C12.230; GSVIVT00002140001; GSVIVT00021097001; GSVIVT00028076001; LOC_Os12g36950; MICPUCDRAFT_70230; MICPUN_55251; MtrDRAFT_AC155884g12v2; OJ1735_C10.16; OSJ

Source	GOs	Term	Type	Identity
Sma3	CTP synthase activity	GO:0003883	Molecular Function	-
Sma3	pyrimidine nucleotide biosynthetic process	GO:0006221	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Nitrogenase component 1, conserved site	IPR000318	-	-
Sma3		IPR000991	-	-
Sma3	CTP synthase	IPR004468	-	-
Sma3	CTP synthase, N-terminal	IPR017456	-	-
Sma3	Glutamine amidotransferase type 1	IPR017926	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G02120.1	CTP synthase family protein chr4:940873-944097 FORWARD LENGTH=556	3.0e-35	86%
RefSeq	Arabidopsis thaliana	NP_192121.2	putative CTP synthase [Arabidopsis thaliana]	5.0e-35	86%
RefSeq	Populus trichocarpa	XP_002320316.1	predicted protein [Populus trichocarpa]	3.0e-35	87%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLK6

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 326 aas, your sequence is shorter than subject: 107 - 445

Fln protein: MKYVLVSGGVVSGLGKGVTASSIGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDVTLTRNNNITTGKIYQSVIDNERRETT*

Protein Length: 108

Fln nts: AAATTACTCTGGAGGGAGCCTCCAAAAATATACGCGCTAGGCCATGTTCCTTACGATGGCTAATTTATTTAAGTCGTAAACTTGGCATCGACTGGATTGTTGAGTGCAAAACCCAGAAGTCCATAGCATTAGAATCGGGGAGG_-_ATGAAATACGTGCTGGTGTCTGGTGGAGTGGTCAGTGGGCTGGGCAAGGGAGTCACAGCTTCCAGCATTGGAGTGGTGTTGAAGGCATGCGGACTTCGAGTTACCTCTATTAAAATCGATCCATATTTGAATACAGATGCGGGGACCATGTCTCCCTTTGAGCATGGAGAAGTTTTTGTGCTTGACGATGGTGGCGAGGTTGATTTGGATCTTGGTAACTATGAGCGCTTTTTAGATGTGACATTGACTCGAAATAACAATATCACCACTGGGAAGATATATCAGTCCGTTATCGACAATGAACGGAGGGAAACTACCTAGGAAAGACTGTAACAGGTAATTCCACATATTACAGATG

Fln Alignment:

AllPine_a_rep_c79284___MKYXXXXXXXXXXXXXXVTASSIGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHXXXXXXXXXXXXXXXXGNYERFLDVTLTRNNNITTGKIYQSVIDNXXXXXXXXRL*QVIPHITD
B8LLK6________________MKYVLVSGGVVSGLGKGVTASGIGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDVKLTRNNNITTGKIYQSVIDNERRGNYLGKTVQVIPHITD

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
335		75	25		0.996473
338	25	75			0.996473
347		75	25		0.996473
348	75		25		0.996473
349		75		25	0.996473
352		25	75		0.996473
353		75	25		0.996473
413		66		33	0.997452
414		66	33		0.997452
422	33			66	0.997452
429			33	66	0.997464
431		33		66	0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain