SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene129006

Length: 444 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene129006
TTTGTACATGTATCTTCGTCACCGCTCGCTCTGGGTTTCGGTTGTATTTTCCTGGCACCTGTATTTATATGTTCTCGTGACCACGGCCAACACTCTAATTTTAACCTCTCAGATAATTCGGAAAGCTTCAAAGAGCGGCGGCGAAAAACGAAAGGACAAGAATTTTGGTTGTCTCACAGGGAATGTGAATGCGAAACTCCGAAATCCTAAATTTCGCCCGCTTGTCACCCACTGGCATAGGCTCCAAAACAATTAGCTCACAGTTATGGCAGCAATGGACCCATCATCAGCTGGAGCCTCCTCCAAAGTTAAGGCTGGTGGAGTACAACCTTCTGAATCGACCCTCAAGCGCAAACGAGGCATCTTCCAGAAAGATTTGCAACACATGATGTATGGATATGGCGATGATCCAAATCCCTTGCCGGAGACTGCTGCATTATTGGA

Ace file of the UniGene sp_v3.0_unigene129006 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transcription initiation factor TFIID subunit D11 [Arabidopsis thaliana] gb\|AAQ65105.1\| At1g02680 [Arabidopsis thaliana] gb\|AAR28017.1\| TAF13 [Arabidopsis thaliana] dbj\|BAD43669.1\| putative transcription factor TFIID [Arabidopsis thaliana] dbj\|BAD43729.1\|	-	-	2.0e-05	56%
FL-Next	tr=Transcription initiation factor TFIID subunit; Jatropha curcas.	-	-	0.0	82%

Source	Gene names
Sma3	OsI_01746; OsJ_01607; POPTRDRAFT_572633; RCOM_1347480;

Source	GOs	Term	Type	Identity
Sma3	transcription factor complex	GO:0005667	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA polymerase II transcription factor activity	GO:0003702	Molecular Function	-
Sma3	transcription from RNA polymerase II promoter	GO:0006366	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Transcription initiation factor IID, 18kDa subunit	IPR003195	-	0.0	-
Sma3	Histone-fold	IPR009072	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002320312.1	predicted protein [Populus trichocarpa]	2.0e-17	82%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: E9JFW0

Fln msg: Distance to subject end: 71 aas, your sequence is shorter than subject: 59 - 128

Fln protein: MAAMDPSSAGASSKVKAGGVQPSESTLKRKRGIFQKDLQHMMYGYGDDPNPLPETAALL

Protein Length: 60

Fln nts: TTTGTACATGTATCTTCGTCACCGCTCGCTCTGGGTTTCGGTTGTATTTTCCTGGCACCTGTATTTATATGTTCTCGTGACCACGGCCAACACTCTAATTTTAACCTCTCAGATAATTCGGAAAGCTTCAAAGAGCGGCGGCGAAAAACGAAAGGACAAGAATTTTGGTTGTCTCACAGGGAATGTGAATGCGAAACTCCGAAATCCTAAATTTCGCCCGCTTGTCACCCACTGGCATAGGCTCCAAAACAATTAGCTCACAGTT_-_ATGGCAGCAATGGACCCATCATCAGCTGGAGCCTCCTCCAAAGTTAAGGCTGGTGGAGTACAACCTTCTGAATCGACCCTCAAGCGCAAACGAGGCATCTTCCAGAAAGATTTGCAACACATGATGTATGGATATGGCGATGATCCAAATCCCTTGCCGGAGACTGCTGCATTATTGGA

Fln Alignment:

AllPine_a_rep_c79200___QPSESTLKRKRGIFQKDLQHMMYGYGDDPNPLPETAALL
E9JFW0________________QPSETSFKRKRGVFQKDLQHMMYGFGDDPNPLPETVALV

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
192	83		16		0.994513
194		16		83	0.994513
195	16			83	0.994513
198		16		83	0.994513
199		16		83	0.994513
200	16			83	0.994513
201	16			83	0.994512
204	83			16	0.994512
205		16	83		0.994512
206	16	83			0.994512
208			16	83	0.994512
210		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain