SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene128972

Length: 362 nt

UniGene Fasta

>sp_v3.0_unigene128972
CGTCGTGACCTTGGCTGTCACTCATTTTCAGACAAAACACAGCTACAGATTTGGATTCTTCACCATGAAGCTCAAGCTTGTTGCAGGAGATTCTGCTGTATTTGTGATTATTTATTATATGGCCTCCAAAGACTTTGAGACAAGAGACGAGCTGGATTTCGAATTCCTGGGGAACGTAAGCGGGCAGCCCTATGCTCTGCAAACAAACATATACGTGGATGGCGTTGGAGGGAGAGAACAGAGAAATGAGCTCTGGTTCGATCCCACGGCCGACTTTCATACATACTCCTTTCTCTGGAACTACCATCAGCTTATGTATGTAGAAATCCTAGGTGAAACCTACTATATTTTAATTAGATATC

Ace file of the UniGene sp_v3.0_unigene128972

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable xyloglucan endotransglucosylase/hydrolase protein 8 n=2 Tax=Arabidopsis RepID=XTH8_ARATH	-	-	1.0e-32	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Sma3	Xyloglucan endotransglycosylase	-	-	3.05483e-42	-

Source	ECs	Term	Type	e value	Identity
Sma3	Xyloglucan:xyloglucosyl transferase.	EC:2.4.1.207	-	0.0	-

Source	Gene names
Sma3	19-1-5; AoXET1; AoXET2; At1g11545; At2g06850; At2g14620; At4g03210; At4g25810; At4g30270; At4g37800; At5g13870; At5g57530; At5g57540; At5g57550; At5g65730; BR1; EXGT; EXGT-A1; EXGT-A4; EXGT-A5; EXGT-A6; EXGT-N2; EXT; F14M19.90; GSVIVT00003361001; GSVIVT00

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	xyloglucan:xyloglucosyl transferase activity	GO:0016762	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	cellular glucan metabolic process	GO:0006073	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	response to mechanical stimulus	GO:0009612	Biological Process	-
Sma3	response to low light intensity stimulus	GO:0009645	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	unidimensional cell growth	GO:0009826	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Beta-glucanase	IPR008264	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G11545.1	XTH8 xyloglucan endotransglucosylase/hydrolase 8 chr1:3878689-3880286 REVERSE LENGTH=305	9.99967e-42	65%
RefSeq	Arabidopsis thaliana	NP_563892.1	xyloglucan:xyloglucosyl transferase [Arabidopsis thaliana]	9.99967e-42	65%
RefSeq	Populus trichocarpa	XP_002304928.1	predicted protein, partial [Populus trichocarpa]	7.0e-40	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NLB7

Fln msg: Distance to subject end: 118 aas, your sequence is shorter than subject: 120 - 296

Fln protein: VVTLAVTHFQTKHSYRFGFFTMKLKLVAGDSAVFVIIYYMASKDFETRDELDFEFLGNVSGQPYALQTNIYVDGVGGREQRNELWFDPTADFHTYSFLWNYHQLMYVEILGETYYILIRY

Protein Length: 121

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTCAGACAAAACACAGCTACAGATTTGGATTCTTCACCATGAAGCTCAAGCTTGTTGCAGGAGATTCTGCTGTATTTGTGATTATTTATTATATGGCCTCCAAAGACTTTGAGACAAGAGACGAGCTGGATTTCGAATTCCTGGGGAACGTAAGCGGGCAGCCCTATGCTCTGCAAACAAACATATACGTGGATGGCGTTGGAGGGAGAGAACAGAGAAATGAGCTCTGGTTCGATCCCACGGCCGACTTTCATACATACTCCTTTCTCTGGAACTACCATCAGCTTATGTATGTAGAAATCCTAGGTGAAACCTACTATATTTTAATTAGATATC

Fln Alignment:

AllPine_a_rep_c79068___FQTKHSYRFGFFTMKLKLVAGDSAVFVIIYYMASKDFETRDELDFEFLGNVSGQPYALQTNIYVDGVGGREQRNELWFDPTADFHTYSFLWNYHQLMY
A9NLB7________________FQTKHSYRFGWFTMKLKLVAGDSAGVVTAYYMASKDFETRDELDFEFLGNRSGQPYALQTNIYVNGVGLREQRNELWFDPTEDFHTYSFLWNNHQIIF

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain