SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene128704

Length: 491 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene128704
TGCCTGGTGGGATGGGAGTGCAGTTTATGGAAGCTCAGATTGTATCAATGGGCCATCAAGCCTGCGGTGCCCTTGATCTCTGGAACTACCCTGTGTGGATGAGGGACCTTATTGCTCAGGACCCCAATGGCCAGGACAGACCTGATCACGTAGACATGCCTGCACTTGAGATTTATCGTGACAGGGAGAGGAGCGTATCAAGATACAATCAATTCCGTCGCAGTATGCTTATGATTCCCATTGCTAAATGGGAGGACCTTACAGACGATAAGGAGGCTATCCAAACCCTGCAAGAGGTTTATGGTAACGACGTTGAAAATTTGGATCTGTTGGTGGGCATGATGGCAGAAAAGAAGATCAAAGGTTATGCAATCAGTGAGACAGCTTTCTTTATCTTCCTGATCATGGCATCACGTCGACTGGAGGCAGATCGGTTTTTCACCAGTGATTTTAACAAAGAAGTATATACAGAGAAGAACTTAGAATGGGTA

Ace file of the UniGene sp_v3.0_unigene128704 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Oxygenase (Fragment) n=2 Tax=Nicotiana RepID=O82031_TOBAC	-	-	0.0	80%
FL-Next	tr=Pathogen-inducible alpha-dioxygenase; Nicotiana attenuata (Coyote tobacco).	-	-	0.0	80%
Sma3	Oxidoreductase, putative	-	-	6.745e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	NAD(P)H oxidase.	EC:1.6.3.1	-	6.744e-07	-

Source	Gene names
Sma3	At1g73680; At3g01420; At3g01420/T13O15.6; F25P22.10; GSVIVT00017793001; GSVIVT00020782001; GSVIVT00020785001; LOC_Os12g26290; MtrDRAFT_AC139526g53v2; Os12g0448900; OsI_38200; OsJ_35967; PHYPADRAFT_191272; PIOX_NICAT; POPTRDRAFT_772644; POPTRDRAFT_820569;

Source	GOs	Term	Type	Identity
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	lipoxygenase activity	GO:0016165	Molecular Function	-
Sma3	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	GO:0016702	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	fatty acid alpha-oxidation	GO:0001561	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	cell death	GO:0008219	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Haem peroxidase, animal	IPR002007	-	0.0	-
Sma3	Haem peroxidase, animal, subgroup	IPR019791	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G01420.1	ALPHA-DOX1, DOX1, DIOX1, PADOX-1 Peroxidase superfamily protein chr3:159689-162726 REVERSE LENGTH=639	76%
RefSeq	Arabidopsis thaliana	NP_186791.1	alpha-dioxygenase [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002311389.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q9AXU5

Fln msg: Distance to subject end: 50 aas, your sequence is shorter than subject: 163 - 643

Fln protein: PGGMGVQFMEAQIVSMGHQACGALDLWNYPVWMRDLIAQDPNGQDRPDHVDMPALEIYRDRERSVSRYNQFRRSMLMIPIAKWEDLTDDKEAIQTLQEVYGNDVENLDLLVGMMAEKKIKGYAISETAFFIFLIMASRRLEADRFFTSDFNKEVYTEKNLEWV

Protein Length: 164

Fln nts: TGCCTGGTGGGATGGGAGTGCAGTTTATGGAAGCTCAGATTGTATCAATGGGCCATCAAGCCTGCGGTGCCCTTGATCTCTGGAACTACCCTGTGTGGATGAGGGACCTTATTGCTCAGGACCCCAATGGCCAGGACAGACCTGATCACGTAGACATGCCTGCACTTGAGATTTATCGTGACAGGGAGAGGAGCGTATCAAGATACAATCAATTCCGTCGCAGTATGCTTATGATTCCCATTGCTAAATGGGAGGACCTTACAGACGATAAGGAGGCTATCCAAACCCTGCAAGAGGTTTATGGTAACGACGTTGAAAATTTGGATCTGTTGGTGGGCATGATGGCAGAAAAGAAGATCAAAGGTTATGCAATCAGTGAGACAGCTTTCTTTATCTTCCTGATCATGGCATCACGTCGACTGGAGGCAGATCGGTTTTTCACCAGTGATTTTAACAAAGAAGTATATACAGAGAAGAACTTAGAATGGGTA

Fln Alignment:

AllPine_a_rep_c78171___QIVSMGHQACGALDLWNYPVWMRDLIAQDPNGQDRPDHVDMPALEIYRDRERSVSRYNQFRRSMLMIPIAKWEDLTDDKEAIQTLQEVYGNDVENLDLLVGMMAEKKIKGYAISETAFFIFLIMASRRLEADRFFTSDFNKEVYTEKNLEWV
Q9AXU5________________QMVSMGHQACGALELWNYPMWMRDLIPQDVDGTDRPDHVDLAALEIYRDRERSVARYNEFRRGMLQIPISKWEDLTDDEEVINTLREVYGDDVEELDLMVGMAAEKKIKGFAISETAFFIFLIMASRRLEADRFFTSNYNEETYTKKGLEWV

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
164		60		40	1.0
294	14		85		0.993533
298	85			14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain