SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene128615

Length: 634 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene128615 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Delta7 sterol C-5 desaturase n=1 Tax=Zinnia violacea RepID=Q4ACU1_ZINEL	-	-	2.0e-24	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Sma3	Delta-7-sterol-C5	-	-	3.058e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Lathosterol oxidase.	EC:1.14.21.6	-	2.528e-17	-

Source	KEGGs	Term	e value	Identity
Sma3	Steroid biosynthesis	00100	2.528e-17	%
Sma3	Biosynthesis of terpenoids and steroids	01062	2.528e-17	%
Sma3	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	2.528e-17	%
Sma3	Biosynthesis of plant hormones	01070	2.528e-17	%
Sma3	Metabolic pathways	01100	2.528e-17	%
Sma3	Biosynthesis of secondary metabolites	01110	2.528e-17	%

Source	Gene names
Sma3	At3g02580; At3g02590; DWF7; F16B3.22; GSVIVT00038254001; HDF7; OSJNBa0083M16.29; Os01g0134500; OsI_00277; OsJ_00268; PHYPADRAFT_135889; POPTRDRAFT_670923; POPTRDRAFT_831136; RCOM_1728170; STE1; ZeSTE1;

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	lathosterol oxidase activity	GO:0050046	Molecular Function	-
Sma3	fatty acid biosynthetic process	GO:0006633	Biological Process	-
Sma3	sterol biosynthetic process	GO:0016126	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Fatty acid hydroxylase	IPR006694	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G02590.1	Fatty acid hydroxylase superfamily protein chr3:549340-550553 FORWARD LENGTH=279	5.0e-22	58%
RefSeq	Arabidopsis thaliana	NP_186908.1	Delta(7)-sterol-C5(6)-desaturase [Arabidopsis thaliana]	6.0e-22	58%
RefSeq	Populus trichocarpa	XP_002305173.1	predicted protein [Populus trichocarpa]	3.0e-24	67%

Full-Lengther Next Prediction

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
242			66	33	0.997452
423	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain