SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene128522

Length: 642 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene128522 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dirigent-like protein n=1 Tax=Tsuga heterophylla RepID=Q9SDQ7_TSUHE	-	-	0.0	69%
FL-Next	tr=Dirigent-like protein; Tsuga heterophylla (Western hemlock) (Abies heterophylla).	-	-	0.0	69%
Sma3	Dirigent-like protein	-	-	1.4013e-45	-

Source	Gene names
Sma3	AT4g11180; At1g64160; At4g11180; DIR9; DPO; DRR206-c; F2P3.6; GSVIVT00002504001; GSVIVT00002505001; GSVIVT00002506001; GSVIVT00002507001; OJ1136_D11.116; OsJ_25280; PI206; POPTRDRAFT_413392; POPTRDRAFT_554436; POPTRDRAFT_554440; POPTRDRAFT_640410; POPTRDR

Source	GOs	Term	Type	e value	Identity
Sma3	defense response	GO:0006952	Biological Process	0.0	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Plant disease resistance response protein	IPR004265	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G64160.1	Disease resistance-responsive (dirigent-like protein) family protein chr1:23814063-23814611 FORWARD LENGTH=182	52%
RefSeq	Arabidopsis thaliana	NP_176598.1	Disease resistance-responsive (dirigent-like protein) family protein [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002297995.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
464		40	60		1.0
517		33		66	0.997452
518		33	66		0.997452
521	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain