SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene128478

Length: 324 nt

UniGene Fasta

>sp_v3.0_unigene128478
CGTCGTGACCTTGGCTGTCACTCAGTTGTCAAATATCTATGCTGAGGCAGGCAGGTGGGAGGATGTCGCGAAGTTGAGGACCATGATGAAAGAGAGGGAAGTGACGTCGTGACCTGGCTGTAGTTTTATTGAAGTAAATAGAGAAGTCCATACATTCCTTGTGGGAGACAAAACCCATCGTCAAACTGAAAAAGTTTATGCTATGTTGGAAACCTTGTATGGGCAAATGAAGGAGGCGGGATATGTGCCTGACACAAATCTTGTTCTGCAAGATGTGGAGGAGGAGATGAAGGAAATCATGCTATGCAGTCATAGTGAGAAGCT

Ace file of the UniGene sp_v3.0_unigene128478

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein (Fragment) n=1 Tax=Picea abies RepID=B3U1V0_PICAB	-	-	6.0e-38	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Sma3	Pentatricopeptide repeat protein	-	-	0.0	-

Source	Gene names
Sma3	At1g08070; At1g11290; At1g25360; At3g08820; At3g13770; At3g26782; At3g49140; At3g49170; At3g57430; At4g02750; B1032F05.19; EMB2261; F17O14.29; F2K15.2; F2K15.30; F4F7.25; GSVIVT00001706001; GSVIVT00003060001; GSVIVT00006467001; GSVIVT00006516001; GSVIVT00

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	mRNA modification	GO:0016556	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Uncharacterised protein family Cys-rich	IPR006461	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G49142.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr3:18215788-18217848 REVERSE LENGTH=686	6.0e-31	55%
RefSeq	Arabidopsis thaliana	NP_001190038.1	tetratricopeptide repeat-like family protein [Arabidopsis thaliana]	8.0e-31	55%
RefSeq	Populus trichocarpa	XP_002324235.1	predicted protein [Populus trichocarpa]	2.0e-30	54%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: Distance to subject end: 64 aas, your sequence is shorter than subject: 107 - 795

Fln protein: VVTLAVTQLSNIYAEAGRWEDVAKLRTMMKEREVTS*PGCSFIEVNREVHTFLVGDKTHRQTEKVYAMLETLYGQMKEAGYVPDTNLVLQDVEEEMKEIMLCSHSEK

Protein Length: 108

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTGTCAAATATCTATGCTGAGGCAGGCAGGTGGGAGGATGTCGCGAAGTTGAGGACCATGATGAAAGAGAGGGAAGTGACGTCGTGACCTGGCTGTAGTTTTATTGAAGTAAATAGAGAAGTCCATACATTCCTTGTGGGAGACAAAACCCATCGTCAAACTGAAAAAGTTTATGCTATGTTGGAAACCTTGTATGGGCAAATGAAGGAGGCGGGATATGTGCCTGACACAAATCTTGTTCTGCAAGATGTGGAGGAGGAGATGAAGGAAATCATGCTATGCAGTCATAGTGAGAAGCT

Fln Alignment:

AllPine_a_rep_c77252___LSNIYAEAGRWEDVAKLRTMMKEREVTS*PGCSFIEVNREVHTFLVGDKTHRQTEKVYAMLETLYGQMKEAGYVPDTNLVLQDVEEEMKEIMLCSHSEK
B8LQA8________________LSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGDRTHPQSEQIYAMLEILYEQMRKAGYVPNTNLALQDVEEEAKENILSSHSEK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain