SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene128344

Length: 442 nt

UniGene Fasta

>sp_v3.0_unigene128344
CCCTTGGGCAAGCTCCTGGGTCGGAGAAGCAGGTGGAGCTTATAACAGTGGAAAGCATCGTGTTTCAGATGCATTTGTTCCTTGTTTTTGGTATTTAGATCAGCTTGGAATGTCATCTACATTCAATACTAAAGTTTATTGTAGACAAAGCTTGATTGGTGGTAACTATGGCCTTCTTAACACAACTACTTTTGCACCCAATCCTGATTATTATAGGTGAGCAGTCAGTGATCCACTGTACCTCTTCAGAATGTGGGGCTGCTTTACTTAATGTCAAGAATCTCCAAAGAATTTAATTTGGAATTTGAAAGAACTATCTCTGTTATTGAGGGAGTAAATTATTGGTGTTTTTCTAGAAACGAGCGAAGTTCATGCTTGTCTTTCTGGTTTATGATTCAGTGCACTGCTTTGGCATCGGTTGATTGGGAAAAGGTGTGCTTTC

Ace file of the UniGene sp_v3.0_unigene128344

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Heparanase-like protein 3 [Arabidopsis thaliana] gb\|AED93924.1\| Heparanase-like protein 3 [Arabidopsis thaliana]	-	-	9.0e-27	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Sma3	Heparanase-like protein 3	-	-	1.702e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:3.2.-.-	-	1.702e-12	-

Source	Gene names
Sma3	AT5G61250; At5g07830; At5g34940; At5g61250; F13G24.30; GSVIVT00006396001; GSVIVT00016263001; GSVIVT00030073001; GSVIVT00032761001; GSVIVT00032762001; LOC_Os03g11320; LOC_Os12g38920; MAF19.29; MFB13.2; MGG23.2; OJ1579_C03.21; OSJNBa0032L17.36; OSJNBa0035I0

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	lysosomal membrane	GO:0005765	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	hydrolase activity, acting on glycosyl bonds	GO:0016798	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 79	IPR005199	-	-
Sma3	Calmodulin-binding domain, plant	IPR012417	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G34940.2	AtGUS3, GUS3 glucuronidase 3 chr5:13235912-13238718 REVERSE LENGTH=536	4.0e-32	76%
RefSeq	Arabidopsis thaliana	NP_198344.2	Heparanase-like protein 3 [Arabidopsis thaliana]	4.0e-33	77%
RefSeq	Populus trichocarpa	XP_002321464.1	predicted protein [Populus trichocarpa]	8.0e-36	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LM26

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 58 aas, your sequence is shorter than subject: 73 - 381

Fln protein: PWASSWVGEAGGAYNSGKHRVSDAFVPCFWYLDQLGMSSTFNTKVYCRQSLIGGNYGLLNTTTFAPNPDYYR*

Protein Length: 74

Fln nts: CCCTTGGGCAAGCTCCTGGGTCGGAGAAGCAGGTGGAGCTTATAACAGTGGAAAGCATCGTGTTTCAGATGCATTTGTTCCTTGTTTTTGGTATTTAGATCAGCTTGGAATGTCATCTACATTCAATACTAAAGTTTATTGTAGACAAAGCTTGATTGGTGGTAACTATGGCCTTCTTAACACAACTACTTTTGCACCCAATCCTGATTATTATAGGTGAGCAGTCAGTGATCCACTGTACCTCTTCAGAATGTGGGGCTGCTTTACTTAATGTCAAGAATCTCCAAAGAATTTAATTTGGAATTTGAAAGAACTATCTCTGTTATTGAGGGAGTAAATTATTGGTGTTTTTCTAGAAACGAGCGAAGTTCATGCTTGTCTTTCTGGTTTATGATTCAGTGCACTGCTTTGGCATCGGTTGATTGGGAAAAGGTGTGCTTTC

Fln Alignment:

AllPine_a_rep_c76771___PWASSWVGEAGGAYNSGKHRVSDAFVPCFWYLDQLGMSSTFNTKVYCRQSLIGGNYGLLNTTTFAPNPDYY
B8LM26________________PWSKAWVGETGGAYNSGHNLITNAFVMSFWYLDQLGMASAFSTKSFCRQSLIGGNYGLLNTTTFLPNPDYY

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
253		75		25	0.996473
288	25			75	0.996474

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain