SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene128221

Length: 448 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene128221

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative gibberellin-regulated protein [Arabidopsis thaliana] gb\|AAT47788.1\| At2g30810 [Arabidopsis thaliana] gb\|AAU05509.1\| At2g30810 [Arabidopsis thaliana] gb\|AEC08443.1\| putative gibberellin-regulated protein [Arabidopsis thaliana]	-	-	8.0e-20	48%
FL-Next	tr=GASA5-like protein; Picea mariana (Black spruce) (Abies mariana).	-	-	0.0	84%
Sma3	GASA5-like protein	-	-	0.0	-

Source	Gene names
Sma3	Sb35;

Source	InterPros	Term	Type	e value	Identity
Sma3	Gibberellin regulated protein	IPR003854	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G02885.1	GASA5 GAST1 protein homolog 5 chr3:638323-639011 REVERSE LENGTH=97	2.0e-24	70%
RefSeq	Arabidopsis thaliana	NP_566186.1	GAST1 protein homolog 5 [Arabidopsis thaliana]	2.0e-24	70%
RefSeq	Populus trichocarpa	XP_002301708.1	predicted protein [Populus trichocarpa]	2.0e-26	81%

Full-Lengther Next Prediction

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
80	66		33		0.997461
82		33	66		0.997458
84		66		33	0.997458
88		25	75		0.996476
90		66		33	0.997452
93			33	66	0.997452
95	66		33		0.997452
97		25		75	0.996476
99	33		33	33	0.997753
101		66	33		0.997452
104	33			66	0.997452
106		33		66	0.997452
107		33		66	0.997452
108	33	33	33		0.997753
109	33	66			0.997452
111		66	33		0.997452
147			50	50	1.0
153			50	50	1.0
172	87			12	0.992555
174	87		12		0.992555
175			87	12	0.992555
176		87	12		0.992555
178	87	12			0.992555
179		12		87	0.992555
180	12		75	12	0.975359
184	85	14			0.993533
186		85		14	0.993533
188	14			14	0.984337
189		14		85	0.993533
191		14		85	0.993533
192	14	85			0.993533
219	50	50			1.0
224	50	50			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain