SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene128105

Length: 963 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene128105 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_7.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7THM2_VITVI	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	0.0	-
Sma3	metabolic process	GO:0008152	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	HAD-superfamily hydrolase, subfamily IA, variant 3	IPR006402	-	-
Sma3	Pyrimidine 5-nucleotidase	IPR010237	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G02230.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein chr5:449132-450507 FORWARD LENGTH=280	59%
RefSeq	Arabidopsis thaliana	NP_850754.1	haloacid dehalogenase-like hydrolase domain-containing protein [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002309065.1	predicted protein [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NL51

Fln msg:

Fln protein: MARDENRLVKDQRPRYDCLLFDLDDTLYPLSSGITAACTKNIADYVNQKLGIEENKIPDMCRELFTTYGTSMAGLRARGYEFDYDDYHSFVHGRLPYENLKPDPVLKNLLLSMPQRKIIFTNGDRAHATEVLNRLELRDCFEGIICFETLNLPSQSSRNNNIAPANSTTGKTPVVCKPSKEAVGQALRLAKADPQRTIFFDDSARNIAAGKREGLHTVLVGTSVQTEGADFALESIHNVGEALPEIWEKDGESSKNVRRSRGTTAAIETVVTA*

Protein Length: 275

Fln nts: TACTATGGGGCTCCATTCCATTTAATCCTGCAATATTATCGGCAGAATAGCCATTTCAGTTAATATAGAGTGTTTCTCTACCTCGTCCATTCAAGTGATCGATA_-_ATGGCGCGGGATGAGAATCGGCTCGTGAAAGACCAGAGGCCTAGATATGACTGCCTTCTTTTTGATCTGGACGATACATTATATCCATTGAGTTCCGGAATCACTGCTGCATGCACCAAAAACATCGCAGATTATGTGAATCAAAAGCTTGGTATTGAAGAGAATAAAATCCCAGATATGTGCAGAGAGCTCTTTACAACTTATGGCACATCCATGGCTGGTCTCAGGGCGAGAGGCTATGAATTCGACTACGACGATTACCACAGTTTTGTTCATGGAAGACTGCCATATGAGAATCTTAAGCCAGACCCTGTATTGAAGAATTTGTTATTAAGCATGCCTCAGAGGAAAATTATATTTACGAATGGTGACAGAGCTCATGCCACAGAAGTCCTTAACAGGCTAGAGTTGAGAGATTGCTTTGAAGGCATAATCTGCTTTGAGACACTTAATCTCCCTTCACAAAGTTCTCGAAACAACAATATAGCCCCTGCTAACTCTACGACAGGGAAGACTCCCGTTGTTTGCAAGCCCTCAAAAGAGGCCGTAGGGCAGGCTCTTCGCCTTGCAAAGGCTGATCCACAAAGAACGATCTTTTTTGATGACAGTGCCCGGAATATAGCCGCAGGAAAGCGTGAAGGCTTGCATACTGTATTGGTGGGCACTTCAGTCCAAACAGAGGGAGCGGATTTTGCTCTAGAAAGTATTCACAACGTTGGGGAAGCTTTGCCTGAGATATGGGAAAAAGATGGAGAGAGCTCCAAAAATGTTCGACGGTCAAGAGGAACAACTGCGGCTATTGAAACTGTTGTCACTGCATGA___GCTACGATCTGATTGAATGAGGGAGTGGGGAACCATG

Fln Alignment:

AllPine_a_rep_c75726___MARDENRLVKDQRPRYDCLLFDLDDTLYPLSSGITAACTKNIADYVNQKLGIEENKIPDMCRELFTTYGTSMAGLRARGYEFDYDDYHSFVHGRLPYENLKPDPVLKNLLLSMPQRKIIFTNGDRAHATEVLNRLELRDCFEGIICFETLNLPSQSSRNN--NIAPANSTTGKTPVVCKPSKEAVGQALRLAKADPQRTIFFDDSARNIAAGKREGLHTVLVGTSVQTEGADFALESIHNVGEALPEIW-EKDGESSKNVRRSRG
A9NL51________________MALDENRRVTDQRPRYDCLLFDLDDTLYPLSSGLAAACTNNIGDYVNQKLGVEKSRVPDLSRELYKTYGTTMAGLRAIGYEFDYDDYHSFVHGRLPYENLKPDPVLKNLLLSMPQRKIIFTNSDKVHAAKVLNRLGLEDCFEGIICFETLNPPNITESNNEWGMPTVNSTVPKTPIICKPAKEAMEQALRLANADPQRTIFFDDSPRNIAAGKCAGLHTVLVGTSVRTEGADFALESIHNIREALPEIWEEEDTESAKNVVRSRG

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
217	66		33		0.997452
236		25	75		0.996473
254		25	75		0.996473
255		25		75	0.996473
257	75		25		0.996473
298		75		25	0.996473
311		75		25	0.996473
314		75		25	0.996473
352		50	50		1.0
372		40	60		1.0
377	50			50	1.0
393	50			50	1.0
406	50		50		1.0
407	60		40		1.0
472		50		50	1.0
476	50		50		1.0
518			25	75	0.996473
519			75	25	0.996473
550	75		25		0.996473
553	25		75		0.996473
559		75		25	0.996473
577	50		50		0.996687
587	50			50	0.996687
590	75		25		0.996473
601		25		75	0.996473
631		83		16	0.994512
639	16		66	16	0.988813
641	16		83		0.994512
642	83			16	0.994512
698		16		83	0.994512
705		83		16	0.994512
791	60		40		1.0
794	40		60		1.0
799	80	20			0.995493
800		20	80		0.995493
914		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain