SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene128047

Length: 775 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene128047 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pyruvate kinase n=4 Tax=Oryza sativa RepID=Q6ZLB7_ORYSJ	-	-	2.0e-38	86%
FL-Next	sp=Pyruvate kinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Sma3	Pyruvate kinase	-	-	1.12e-30	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:2.7.1.4-	-	3.38105e-41	-

Source	Gene names
Sma3	At3g22960; GSVIVT00020102001; GSVIVT00020382001; GSVIVT00023818001; GSVIVT00038611001; LOC_Os03g46910; OJ1014_E09.29-1; OJ1014_E09.29-2; OSJNBb0113I20.13; Os03g0672300; Os07g0181000; OsI_12966; OsI_25125; OsJ_12060; OsJ_23327; PHYPADRAFT_128385; PHYPADRAF

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	pyruvate kinase activity	GO:0004743	Molecular Function	-
Sma3	potassium ion binding	GO:0030955	Molecular Function	-
Sma3	glycolysis	GO:0006096	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Pyruvate kinase	IPR001697	-	-
Sma3	Pyruvate kinase, barrel	IPR015793	-	-
Sma3	Pyruvate kinase, alpha/beta	IPR015794	-	-
Sma3	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	-
Sma3	Pyruvate kinase, active site	IPR018209	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G22960.1	PKP1, PKP-ALPHA Pyruvate kinase family protein chr3:8139369-8141771 FORWARD LENGTH=596	1.96182e-44	82%
RefSeq	Arabidopsis thaliana	NP_566720.1	Pyruvate kinase family protein [Arabidopsis thaliana]	2.94273e-44	82%
RefSeq	Populus trichocarpa	XP_002311649.1	predicted protein [Populus trichocarpa]	9.80909e-45	83%

Full-Lengther Next Prediction

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
314	90			10	0.90298
315	90		10		0.90298
319	10	90			0.90298
323	90		10		0.90298
324	90	10			0.90298
329	88		11		0.923564
331		11		88	0.923564
332	11		88		0.923564
333	88	11			0.923564
337	11	66	22		0.999999
338	22			66	0.999999
339		22	77		0.999999
341	62		37		1.0
342		87		12	0.992554
343	62	25	12		1.0
345	25	12		62	1.0
346	12		25	62	1.0
348		12		87	0.992554
351	12	25	62		1.0
353	87		12		0.992554
355		25		75	1.0
356	12		75		0.975346
358	16	66		16	0.988813
360	80		20		0.995493
362		20	80		0.995493
372	33	33		33	0.997753
373		25	25	50	0.995533
374	75	25			0.996473
375	33	33	33		0.997753
379		33	66		0.997452
380	33			66	0.997452
390	33	66			0.997452
391		33		66	0.997452
394		33		66	0.997452
429	33			66	0.997452
434		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain