SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene128031

Length: 833 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene128031 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glycolate oxidase n=1 Tax=Zantedeschia aethiopica RepID=Q84LB8_ZANAE	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Sma3	Glycolate oxidase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Transferred entry: 1.1.3.15.	EC:1.1.3.1	-	8.451e-08	-
Sma3	(S)-2-hydroxy-acid oxidase.	EC:1.1.3.15	-	2.8026e-45	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glyoxylate and dicarboxylate metabolism	00630		2.8026e-45	%
Sma3	Metabolic pathways	01100		2.8026e-45	%

Source	Gene names
Sma3	AT4g18360; At3g14130; At3g14415; At3g14420; At4g18360; B1056G08.112; B1364A02.33-1; CHLREDRAFT_127775; F28J12.20; GLO; GO; GOX; GOX1; GOX2; GSVIVT00000984001; GSVIVT00028321001; GSVIVT00034039001; GSVIVT00034041001; GYX1; Gox; H0215F08.7; H0215F08.8; LOC_

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	(S)-2-hydroxy-acid oxidase activity	GO:0003973	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	FMN binding	GO:0010181	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	oxidative photosynthetic carbon pathway	GO:0009854	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	FMN-dependent dehydrogenase	IPR000262	-	-
Sma3	FMN-dependent alpha-hydroxy acid dehydrogenase, active site	IPR008259	-	-
Sma3	Alpha-hydroxy acid dehydrogenase, FMN-dependent	IPR012133	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3		IPR017934	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G14420.1	Aldolase-type TIM barrel family protein chr3:4821804-4823899 FORWARD LENGTH=367	82%
RefSeq	Arabidopsis thaliana	NP_001030694.1	putative peroxisomal (S)-2-hydroxy-acid oxidase 2 [Arabidopsis thaliana]	82%
RefSeq	Populus trichocarpa	XP_002330746.1	predicted protein [Populus trichocarpa]	83%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXW1

Fln msg: Distance to subject end: 51 aas, your sequence is shorter than subject: 277 - 367

Fln protein: IRFRPRVLVDVSEIDMSTTVLGFKISMPIMIAPTAMQKMAHPDGELATARAASAAGTIMTLSSWATSSVEDVSSTGQGIHFFQLYVLKDRYVVAQLVRRAENAGFKAIVLTVDTPRLGRREADIRNRFSLPPHLTLKNFEGLDLGTLEKTGGGSGLASYAANQTDRSLSWKDVKWLQTITNLPILVKGVMTAEDTRLAVQAGAAGIIVSNHGARQLDYVPATISCLEEECV*VVKAARGQIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA

Protein Length: 278

Fln nts: GAATAAGGTTCCGACCTCGCGTTCTAGTGGATGTATCAGAAATAGATATGAGTACTACTGTGCTGGGATTTAAGATATCAATGCCTATTATGATTGCTCCAACAGCCATGCAAAAGATGGCTCATCCAGATGGAGAGTTGGCTACTGCAAGAGCTGCTTCAGCTGCTGGAACAATAATGACGCTTTCATCATGGGCTACATCAAGTGTTGAAGATGTTTCCTCAACTGGACAAGGCATCCACTTTTTCCAGCTTTATGTACTCAAGGATAGATATGTCGTTGCACAACTTGTTAGAAGGGCAGAGAATGCTGGCTTTAAGGCAATTGTACTTACTGTAGATACACCTCGACTGGGGCGGAGGGAGGCTGATATTAGAAACAGATTCTCACTGCCCCCGCATCTGACTCTGAAGAATTTTGAGGGCTTGGATCTTGGTACATTAGAGAAGACGGGAGGAGGCTCTGGACTAGCCTCATATGCTGCCAATCAAACTGACAGATCATTGAGTTGGAAGGATGTTAAGTGGCTGCAGACAATCACCAACTTACCAATCCTTGTGAAGGGAGTAATGACAGCTGAGGACACCAGGCTAGCAGTACAAGCAGGTGCTGCAGGGATAATCGTGTCCAACCATGGGGCTAGGCAACTTGATTATGTTCCAGCAACAATAAGCTGCCTGGAAGAGGAGTGTGTGTAGGTTGTAAAAGCTGCAAGAGGTCAAATTCCTGTGTTTCTTGATGGTGGAGTTCGCCGTGGCACAGATGTTTTCAAGGCACTGGCCCTTGGAGCCTCTGGTATTTTTATTGGAAGGCCTGTTGTCTATTCTTTGGCT

Fln Alignment:

AllPine_a_rep_c75291___IRFRPRVLVDVSEIDMSTTVLGFKISMPIMIAPTAMQKMAHPDGELXXXXXXXXAGTIMTLSSWATSSVEDVSSTGQGIHFFQLYVLKDRYVVAQLVRRAENAGFKAIVLTVDTPRLGRREADIRNRFSLPPHLTLKNFEGLDLGTLEKTGGGSGLASYAANQTDRSLSWKDVKWLQTITNLPILVKGVMTAEDTRLAVQAGAAGIIVSNHGARQLDYVPATISCLEEECV*VVKAARGQIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA
A9NXW1________________IRFRPRILIDVTKVDLSTTVLGFKISMPIMIAPTAMQKMAHPEGEFATARASSAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRHVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFSLPPYLTLKNFEGLDLGKMEKT-ADSGLASYVAGQIDRSLSWKDVKWLQTITNLPILVKGVMTAEDTRLAVQAGVQGIIVSNHGARQLDYVPATISSLEE----VVKAAQGRVPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLA

SNPs (tot: 3)

Position	C %	T %	Probability
479	75	25	0.996473
540	40	60	1.0
595	50	50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain