SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene127997

Length: 1138 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene127997

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	3-ketoacyl-CoA synthase n=7 Tax=Poaceae RepID=C5YVX8_SORBI	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Sma3	Beta-ketoacyl-coa synthase family protein	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Transferases, Acyltransferases, Transferring groups other than amino-acyl groups.	EC:2.3.1.-	-	2.657e-41	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Fatty acid biosynthesis	00061		2.657e-41	%
Sma3	Tetracycline biosynthesis	00253		2.657e-41	%
Sma3	Lysine degradation	00310		2.657e-41	%
Sma3	Arginine and proline metabolism	00330		2.657e-41	%
Sma3	Histidine metabolism	00340		2.657e-41	%
Sma3	Tyrosine metabolism	00350		2.657e-41	%
Sma3	Benzoate degradation	00362		2.657e-41	%
Sma3	Lipopolysaccharide biosynthesis	00540		2.657e-41	%
Sma3	Glycerophospholipid metabolism	00564		2.657e-41	%
Sma3	Ether lipid metabolism	00565		2.657e-41	%
Sma3	Glycosphingolipid biosynthesis - ganglio series	00604		2.657e-41	%
Sma3	Toluene degradation	00623		2.657e-41	%
Sma3	Naphthalene degradation	00626		2.657e-41	%
Sma3	Aminobenzoate degradation	00627		2.657e-41	%
Sma3	Ethylbenzene degradation	00642		2.657e-41	%
Sma3	Butanoate metabolism	00650		2.657e-41	%
Sma3	Methane metabolism	00680		2.657e-41	%
Sma3	Limonene and pinene degradation	00903		2.657e-41	%
Sma3	Diterpenoid biosynthesis	00904		2.657e-41	%
Sma3	Carotenoid biosynthesis	00906		2.657e-41	%
Sma3	Anthocyanin biosynthesis	00942		2.657e-41	%
Sma3	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945		2.657e-41	%
Sma3	Isoquinoline alkaloid biosynthesis	00950		2.657e-41	%
Sma3	Tropane, piperidine and pyridine alkaloid biosynthesis	00960		2.657e-41	%
Sma3	Betalain biosynthesis	00965		2.657e-41	%
Sma3	Biosynthesis of unsaturated fatty acids	01040		2.657e-41	%
Sma3	Biosynthesis of type II polyketide backbone	01056		2.657e-41	%
Sma3	Biosynthesis of terpenoids and steroids	01062		2.657e-41	%
Sma3	Metabolic pathways	01100		2.657e-41	%
Sma3	Biosynthesis of secondary metabolites	01110		2.657e-41	%
Sma3	Icosanoyl-CoA synthase.	EC:2.3.1.119	-	3.305e-12	-

Source	Gene names
Sma3	AT1G01120; At1g01120; At1g04220; At1g07720; At1g19440; At1g25450; At1g68530; At1g71160; At2g15090; At2g16280; At2g26250; At2g26640; At2g28630; At2g46720; At3g10280; At4g34250; At4g34510; At4g34520; At5g04530; At5g43760; At5g49070; CER6; CER60; CHLREDRAFT_

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	cytosolic ribosome	GO:0022626	Cellular Component	-
Sma3		GO:0008415	Molecular Function	-
Sma3	fatty acid elongase activity	GO:0009922	Molecular Function	-
Sma3	transferase activity, transferring acyl groups other than amino-acyl groups	GO:0016747	Molecular Function	-
Sma3	icosanoyl-CoA synthase activity	GO:0033807	Molecular Function	-
Sma3	fatty acid biosynthetic process	GO:0006633	Biological Process	-
Sma3	response to osmotic stress	GO:0006970	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to light stimulus	GO:0009416	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	unidimensional cell growth	GO:0009826	Biological Process	-
Sma3	wax biosynthetic process	GO:0010025	Biological Process	-
Sma3	suberin biosynthetic process	GO:0010345	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Chalcone/stilbene synthase, C-terminal	IPR012328	-	-
Sma3	Very-long-chain 3-ketoacyl-CoA synthase	IPR012392	-	-
Sma3	FAE1/Type III polyketide synthase-like protein	IPR013601	-	-
Sma3	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal	IPR013747	-	-
Sma3	Thiolase-like, subgroup	IPR016038	-	-
Sma3	Gonadotropin, beta subunit, conserved site	IPR018245	-	-
Sma3	Ribosomal protein S10, conserved site	IPR018268	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G16280.1	KCS9 3-ketoacyl-CoA synthase 9 chr2:7051186-7052724 FORWARD LENGTH=512	55%
RefSeq	Arabidopsis thaliana	NP_179223.1	3-ketoacyl-CoA synthase 9 [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002313793.1	predicted protein [Populus trichocarpa]	56%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A7W7

Fln msg: your sequence is longer than subject: 336 - 305

Fln protein: MQEPINADNANFQWEIDILIVNVSTFGPVPSLTAWIVNRYKMKENVKTFNLSGLGCSASLIAVDMAKDLFKVYRGSYALVIGSENITANAQYRGNCKSMMVTNCLFRVGGYALLLSNKGNDAGRAKMRLLHAVRTNVAAVDEAYDCVMVKEDDEGLSGVSLSPLLMDVAGDAVRKNMATLGPRVLPITEQLYYVYNMICIKALKMNLKPYIPNFRLAFQHFCVHPGGRGVINAIGKSLQLTDYELEPSRMALHRFGNTSVSGVWYEVAYMEAQRRFKVGDRIWQIGLGSGFKCNSAVWEVMRETHPLQSTVWDECIHRYPCDTRNNYPDDYLDRW*

Protein Length: 337

Fln nts: ACACACGACTCGACAGGTTAACACGGAGCTGAGCATACATTTTTTGGTG_-_ATGCAAGAACCCATAAATGCGGATAATGCGAATTTTCAGTGGGAGATCGACATTCTCATCGTCAACGTCTCCACTTTCGGTCCAGTGCCGTCGTTGACAGCGTGGATCGTGAACCGCTACAAGATGAAAGAGAACGTGAAGACCTTCAATCTCTCCGGCCTGGGTTGCAGCGCCAGCCTTATAGCGGTGGACATGGCCAAGGACCTTTTCAAGGTCTATCGTGGCTCCTATGCTCTGGTAATCGGCAGCGAGAACATAACGGCCAACGCCCAGTATCGGGGCAACTGTAAGTCCATGATGGTCACCAACTGTCTCTTCAGAGTCGGTGGCTACGCGTTGCTTCTGTCGAACAAAGGCAACGACGCAGGCCGGGCAAAGATGAGGCTCCTTCACGCGGTCAGGACGAACGTGGCAGCCGTGGATGAGGCCTACGACTGCGTAATGGTAAAGGAAGACGACGAGGGGCTCTCTGGCGTTTCCCTCAGTCCGTTACTCATGGACGTGGCGGGAGACGCTGTGAGGAAGAACATGGCCACGTTGGGCCCCAGAGTGCTCCCGATAACGGAGCAGCTCTACTACGTCTACAACATGATATGCATCAAGGCCTTGAAGATGAATTTGAAGCCTTATATTCCTAATTTCAGGCTCGCCTTCCAGCATTTCTGCGTCCATCCCGGGGGTCGAGGTGTGATCAACGCTATCGGGAAGAGCCTGCAACTAACTGACTACGAACTGGAGCCTTCTCGCATGGCGCTGCATCGCTTCGGGAACACTTCTGTGAGCGGGGTCTGGTATGAAGTGGCTTACATGGAAGCCCAGCGACGGTTTAAGGTGGGGGATCGAATTTGGCAGATAGGACTGGGTTCAGGATTCAAGTGTAACAGCGCAGTGTGGGAAGTGATGAGAGAAACCCATCCTTTGCAGAGCACTGTTTGGGATGAGTGCATCCACAGGTATCCCTGTGATACTCGTAATAATTACCCCGATGATTACCTTGACAGATGGTGA___TGATCAGGTTTACTTCTGAATAACTCTCCATTCGACGAGACTCTGGACAATAAATCGAAAGGAACAACACGTGTAAAAATA

Fln Alignment:

AllPine_a_rep_c75088___VNRYKMKENVKTFNLSGLGCSASLIAVDMAKDLFKVYRGSYALVIGSENITANAQYRGNCKSMMVTNCLFRVGGYALLLSNKGNDAGRAKMRLLHAVRTNVAAVDEAYDCVMVKEDDEGLSGVSLSPLLMDVAGDAVRKNMATLGPRVLPITEQLYYVYNMICIKALKMNLKPYIPNFRLAFQHFCVHPGGRGVINAIGKSLQLTDYELEPSRMALHRFGNTSVSGVWYEVAYMEAQRRFKVGDRIWQIGLGSGFKCNSAVWEVMRETHPLQSTVWDECIHRYPCDTRNNYPDDY
D5A7W7________________MNRYKMKESVKTFNLSGMGCSANVIAVDMAKDLFKIYHDSYALVVGTENTTVNANYGGSDKAMMLTNCLFRVGGNAVLLSNKAKDAARAKMKLLHVVRTNVAADDEAYGCVMSKEDAEGFYGIGLRQSLIEVAGNAVRKNMTTLGSKVLPITELLYYAYNVFCIKALKRNLKPYIPNFRLAFSHFCIHPGGRAVVNGVGKNLRLSDYDLEPSRMALHRFGNTSTSGLWYEVAYLEAKRRFKVGDRVWQIGLGSGFKCNSAVWEVMNETKPREANVWDDCIHRHPCNTRNRFTDDY

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
336	37			62	1.0
337	37		62		1.0
376		37	62		1.0
464	71	28			1.0
467		85		14	0.993533
491	66		33		1.0
535	75		25		0.996473
536	25		75		0.996473
543	75	25			0.996479
548		33		66	0.997452
586		80		20	0.995493
599	50	50			1.0
601	50		50		1.0
611		50	50		1.0
634		50		50	1.0
643		50		50	1.0
698			60	40	1.0
739		50	50		1.0
740		50		50	1.0
747	50		50		1.0
762	50		50		1.0
840	33		66		0.997452
853		33		66	0.997476
920	66	33			1.0
926		83		16	0.994512
962	83	16			0.994512
1000		80	20		0.995493
1018	20			80	0.995493
1019		20	80		0.995493
1022	80			20	0.995493
1102	33		66		0.997452
1115	75			25	0.996473
1118	25			75	0.996473
1122	75			25	0.996473
1123	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain