SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene127994

Length: 939 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene127994 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Aspartyl protease family protein n=3 Tax=Arabidopsis RepID=Q9LS40_ARATH	-	-	2.0e-36	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Sma3	Aspartic proteinase nepenthesin-1, putative	-	-	2.425e-09	-

Source	Gene names
Sma3	At1g25510; At3g18490; F2J7.6; GSVIVT00002585001; GSVIVT00017643001; GSVIVT00030305001; Os01g0140100; OsI_00321; OsI_00323; OsJ_00309; P0480E02.14; PHYPADRAFT_118772; PHYPADRAFT_121432; PHYPADRAFT_3422; POPTRDRAFT_1072380; POPTRDRAFT_207052; POPTRDRAFT_264

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Proteinase inhibitor I2, Kunitz metazoa	IPR002223	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G18490.1	Eukaryotic aspartyl protease family protein chr3:6349090-6350592 REVERSE LENGTH=500	3.9937e-43	49%
RefSeq	Arabidopsis thaliana	NP_188478.1	aspartyl protease family protein [Arabidopsis thaliana]	5.00264e-43	49%
RefSeq	Populus trichocarpa	XP_002315953.1	predicted protein [Populus trichocarpa]	2.0e-40	50%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUE4

Fln msg: Warning!, your query overlaps and the subject is separated, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 223 - 485

Fln protein: VKTWSIPLVHRDAMKGSRNGKELSYKERMQQRLKRDAARVAAINSRLELAVNGIKRSSLRPDSSSASSMSESDFQSPVVSGMDQGSGEYFSRIGVGSPQRDQLMVLDTGSDVSWIQCNPCSDCYQQADPIYTPALSSTFKLVGCQASLCQQLDVSGCSRNGSCMYQVSYGxxNYLVPVDSMGTFCFAFAPTSSSLSIVGNIQQQGTRVSFDRVNNQVGFAVN*

Protein Length: 224

Fln nts: CACCTCCACTCACAAACGGCTTTTACGCCTACGACTTCTACCCCTTCCAGAACGATGGAGAAATGGGTCCTGCGGTGGACATCACAACTTTCCCACCCACGATGGCAGATCAAGACCAAGCTTAATACAGTACTCTGGATGTGCAGACCGCTCTGAAAGTTGCCAGGGGGGAATCTGTAGAAACTGCTAAGGGGGAAACCCTTAGGTGAAAACCTGGTCGATCCCTCTGGTTCACAGAGATGCAATGAAGGGAAGCCGTAATGGTAAGGAACTTAGCTACAAGGAACGCATGCAGCAAAGGCTGAAGCGAGATGCGGCACGGGTGGCCGCCATTAACTCACGGCTGGAGCTTGCCGTGAACGGGATCAAACGTTCGAGTCTCAGGCCCGACTCCTCATCGGCTTCTAGCATGTCGGAGTCTGACTTCCAGAGCCCCGTGGTCTCCGGCATGGACCAAGGTAGTGGCGAATACTTCTCCCGGATCGGTGTCGGTTCTCCCCAGCGCGACCAGCTTATGGTGCTCGACACCGGCTCTGATGTGAGCTGGATCCAGTGCAACCCCTGTTCGGATTGTTACCAGCAAGCTGACCCCATTTACACCCCGGCGCTCTCTTCGACCTTTAAGTTAGTCGGCTGCCAGGCGAGCCTCTGCCAGCAGCTCGACGTCTCGGGGTGCAGTCGCAACGGGAGCTGCATGTACCAGGTGAGCTACGGCxxxxxxAATTATCTGGTTCCCGTCGACTCGATGGGCACTTTCTGTTTCGCCTTTGCGCCGACGTCGTCGAGTCTGTCTATTGTCGGGAATATTCAGCAGCAGGGAACCCGAGTTTCGTTTGACCGTGTTAATAATCAAGTGGGATTTGCCGTCAACTAAGTGCTGAATCCCGTCAAAATCAAGTGGGTTTTGCTGTGAACAAGCGCTGATTTCCGTCAAGAACATT

Fln Alignment:

AllPine_a_rep_c75068___VKTWSIPLVHRDAMKGSRN-GKELSYKERMQQRLKRDAARVAAINSRLELAVNGIKRXXXXXXXXXXXXXXXXXXXSPVVSGMDQGSGEYFSRIGVGSPQRDQLMVLDTGSDVSWIQCNPCSDCYQQADPIYTPALSSTFKLVGCQASLCQQLDVSGCSRNGSCMYQVSYGExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKNYLVPVDSMGTFCFAFAPTSSSLSIVGNIQQQGTRVSFDRVNNQVGFAVN
A9NUE4________________IKPWSIPLVHRDAMKGNSNKNNELSYAERMQQRLKRDAARVAAINSRLELAVNGIKRSSLKPDSSSSFTMAESDFQSPVVSGMDQGSGEYFSRIGVGAPRRDQLMVLDTGSDVTWIQCEPCSDCYQQSDPIYNPALSSSYKLVGCQANLCQQLDVSGCSRNGSCLYQVSYGDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKNYLVPVDSMGTFCFAFAPTSSSLSIVGNIQQQGIRVSFDRANNQVGFAVN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain