SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene127985

Length: 1162 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene127985

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Sugar transporter, putative n=1 Tax=Ricinus communis RepID=B9RTZ7_RICCO	-	-	0.0	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	Sugar transporter, putative	-	-	2.389e-40	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	2.432e-23	-

Source	Gene names
Sma3	AGAA.1; At1g07340; At1g11260; At1g34580; At1g50310; At1g77210; At3g05960; At3g19930; At3g19940; At4g02050; At4g21480; At5g23270; At5g26250; At5g26340; At5g61520; B1008E06.22-1; B1008E06.22-2; B1103G11.41; B1317D11.119-1; F12K21.8; F14I3.9; F18E5.100; F22G

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	sugar:hydrogen symporter activity	GO:0005351	Molecular Function	-
Sma3	high-affinity hydrogen:glucose symporter activity	GO:0005358	Molecular Function	-
Sma3	sucrose:hydrogen symporter activity	GO:0008506	Molecular Function	-
Sma3	monosaccharide transmembrane transporter activity	GO:0015145	Molecular Function	-
Sma3	substrate-specific transmembrane transporter activity	GO:0022891	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	carbohydrate transport	GO:0008643	Biological Process	-
Sma3	pollen development	GO:0009555	Biological Process	-
Sma3	monosaccharide transport	GO:0015749	Biological Process	-
Sma3	sucrose transport	GO:0015770	Biological Process	-
Sma3	carbohydrate transmembrane transport	GO:0034219	Biological Process	-
Sma3	transmembrane transport	GO:0055085	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G26340.1	MSS1, STP13, ATSTP13 Major facilitator superfamily protein chr5:9243851-9246994 REVERSE LENGTH=526	75%
RefSeq	Arabidopsis thaliana	NP_198006.1	sugar transport protein 13 [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002312523.1	predicted protein [Populus trichocarpa]	74%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLP1

Fln msg: Overlapping hits, possible frame ERROR between 800 and 791, Distance to subject end: 164 aas, your sequence is shorter than subject: 365 - 529

Fln protein: MAGGGFTGPVGSGNVAFEARITAYVIITCIMAASGGLMFGYDIGISGGVTGMDDFLVKFFPAVARKEHEAKQSTYCKYDNQGLQLFTSSLYLAGLVATFFASYTTRRFGRRPTMLIAGLFFLAGVVFNAAAQDLLMLIIGRLLLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNITIGILCANLVNYFTAKIKPWGWRLSLGLAGIPAILLSVGSVCLVETPNSLIERGHLEDGKNxxxxxRGTDNVDAEFSELVQASNIAAEVKHPFRNLMKRRNRPQLVITIFLQIFQQLTGINAIMFYAPVLFQTLGFKSDASLYSAVITGAVNVISTIISIYSVDKLGRRVLLLEAGIQMFISQVII

Protein Length: 366

Fln nts: CGTCGTGACCTTCGTCGTGACCTTGGCTGTCAGTGAGTTTTTAGGTGCAGAGTATATAGATAGAAAGA_-_ATGGCGGGCGGGGGATTTACAGGTCCAGTAGGGTCTGGGAATGTAGCCTTCGAGGCGCGCATAACAGCTTATGTTATCATAACTTGTATCATGGCTGCCAGCGGCGGGTTGATGTTTGGCTACGATATTGGAATTTCGGGCGGAGTGACTGGCATGGACGACTTTCTTGTCAAATTCTTCCCCGCCGTGGCGCGCAAGGAACACGAGGCGAAGCAAAGTACATACTGCAAGTACGATAATCAAGGATTACAGCTCTTTACATCATCTCTGTATCTAGCCGGTCTTGTAGCCACATTCTTTGCGTCGTATACTACCAGAAGATTTGGCCGGAGACCGACAATGCTTATTGCCGGCCTATTCTTTCTTGCCGGCGTTGTCTTCAATGCTGCAGCGCAGGATCTTCTTATGCTCATTATCGGAAGATTATTACTCGGATGTGGAGTCGGATTCGCTAATCAGGCGGTTCCTCTTTTCCTGTCAGAGATAGCACCAACTAGAATTCGAGGGGGTCTAAACATCCTCTTCCAGCTGAATATTACAATAGGCATTCTGTGTGCAAATTTAGTGAACTATTTTACAGCTAAGATCAAGCCATGGGGATGGAGGCTTTCTTTGGGCTTGGCAGGTATCCCTGCAATTCTGCTATCTGTGGGGTCTGTATGTTTAGTAGAGACACCTAACAGTCTGATTGAAAGAGGACACCTGGAAGACGGCAAGAATxxxxxxxxxxxxxxxAGGGGAACCGATAATGTGGATGCAGAGTTCAGTGAACTAGTTCAGGCTAGTAACATAGCCGCTGAAGTCAAGCATCCATTTCGAAACCTGATGAAGCGCAGGAATAGACCTCAGCTTGTCATAACCATATTTCTGCAGATCTTCCAGCAGTTGACTGGTATCAATGCGATTATGTTCTATGCTCCCGTGCTCTTCCAGACCTTGGGATTCAAGAGCGATGCTTCTCTTTACTCTGCGGTTATTACTGGTGCAGTCAATGTCATATCCACTATTATTTCCATATACTCGGTGGACAAACTTGGTCGAAGAGTGCTTCTTCTGGAAGCAGGAATACAGATGTTCATTTCACAGGTGATTATT

Fln Alignment:

AllPine_a_rep_c75026___MAGGGFTGPVGSGNVAFEARITAYVIITCIMAASGGLMFGYDIGISGGVTGMDDFLVKFFPAVARKEHEAKQSTYCKYDNQGLQLFTSSLYLAGLVATFFASYTTRRFGRRPTMLIAGLFFLAGVVFNAAAQDXXXXXXXXXXXXXXXXFANQAVPLFLSEIAPTRIRGGLNILFQLNITIGILCANLVNYFTAKIKPWGWRLSLGLAGIPAILLSVGSVCLVETPNSLIERGHLEDGKNVxxxIRGTDNVDAEFSELVQASNIAAEVKHPFRNLMKRRNRPQLVITIFLQIFQQLTGINAIMFYAPVLFQTLGFKSDASLYSAVITGAVNVISTIISIYSVDKLGRRVLLLEAGIQMFISQVII
B8LLP1________________MPAAGFAAPMAPGAVEFEARITPYVIMTCIIAASGGLMFGYDVGISGGVTSMDDFLEKFFPAVYRKKKLVKENAYCKYDNQGLQLFTSSLYLAGLVATFFASYTTRRYGRRPTMLIAGLFFLVGVIFNAAAQDLAMLIVGRLLLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNITIGILFANLVNYGTNKITPWGWRLSLGLAGIPAILLTVGSIFLVETPNSLIERGHLENGKHVxxxIRGTNNVDAEFNELVEASRIAATVKHPFRNLLKRRNRPQIVITICLQIFQQFTGINAIMFYAPVLFQTLGFKNDASLYSAVITGAVNVLSTVISIFAVDKVGRRALLLEAGVQMFISQVII

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
120	25		75		0.996473
121	40	60			1.0
134	25	75			0.996473
173		90		10	0.90298
179			90	10	0.90298
182	11		88		0.923564
186	44		55		1.0
214	40		60		1.0
267	14		85		0.993534
276	33		66		1.0
316		42		57	1.0
334	20			80	0.995493
347		20		80	0.995493
359		75		25	0.996473
361	20		80		0.995493
363		80	20		0.995493
364			20	80	0.995493
365			20	80	0.995493
395		60		40	1.0
396	60	40			1.0
633	25	75			0.996473
638		50		50	1.0
650		50	50		1.0
683	66		33		0.997464
695	33			66	0.997476
794		66	33		0.997452
795	25		75		0.996473
796			75	25	0.996473
797		75		25	0.996473
875	66			33	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain