SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene127952

Length: 1101 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene127952 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative phosphate transporter n=1 Tax=Cryptomeria japonica RepID=Q1XG57_CRYJA	-	-	80%
FL-Next	tr=Putative phosphate transporter; Cryptomeria japonica (Japanese cedar) (Cupressus japonica).	-	-	80%
Sma3	H(+)/Pi cotransporter	-	-	-

Source	Gene names
Sma3	5K14.7; APT1; APT2; At1g20860; At1g76430; At2g32830; At2g38940; At3g54700; At5g43340; At5g43350; At5g43360; At5g43370; EcPT1; EcPT2; EcPT3; EcPT5; EdPT1; F14G6.3; F15M4.7; F24L7.3; F9H16.16; GSVIVT00002927001; GSVIVT00006480001; GSVIVT00006481001; GSVIVT0

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	inorganic phosphate transmembrane transporter activity	GO:0005315	Molecular Function	-
Sma3	symporter activity	GO:0015293	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	phosphate ion transport	GO:0006817	Biological Process	-
Sma3	cellular response to phosphate starvation	GO:0016036	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Hydroxymethylglutaryl-CoA reductase, class I/II	IPR002202	-	-
Sma3	Phosphate permease	IPR004738	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	IPR006186	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G43360.1	" PHT3, ATPT4, PHT1;3 phosphate transporter 1;3 chr5:17409524-17411214 FORWARD LENGTH=521"	76%
RefSeq	Arabidopsis thaliana	NP_199150.1	putative inorganic phosphate transporter 1-3 [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002315705.1	high affinity inorganic phosphate transporter [Populus trichocarpa]	76%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q1XG57

Fln msg: Distance to subject end: 231 aas, your sequence is shorter than subject: 314 - 544

Fln protein: MARNRLEVLNALDVARTQWYHFTAIIIAGMGFFTDAYDLFCISTVTKLLGRIYYFDPSSKSPGSLPPNVSAAVNGVALCGTLAGQLFFGWMGDKLGRKKVYGVTLMIMVITSIASGLSFGSTAKSVMTTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILAGGAVAIIVSTAFNKKYERPVYQDDPRGSTAHEADYVWRIILMFGAVPAALTYYWRMKMPETARYTALVARNVKQAAADTSKVLQVDVEADIRVDEVVAKNDLGFALFSKEFARRHGLHLLGTASTWFLFDIAFYSQ

Protein Length: 315

Fln nts: ATGGGAACGCTCAGTGTTCGGCTCTCACCTCCGTCGAAGAAATAGCTAAGGATTCAGTTTCTGCTGTGAAGAATCTGTCTGTATGGTTTTGCTTCACAGCTGTAGAACGCTCTAAACTATACAACAGATTTTAAAGGAAATCTTGAACCAAGAATTATC_-_ATGGCAAGGAACCGACTGGAAGTATTAAATGCTTTGGACGTAGCAAGAACGCAATGGTACCACTTTACTGCAATCATTATTGCAGGCATGGGCTTCTTCACGGATGCCTATGACTTGTTCTGCATTTCAACAGTCACGAAGCTCCTGGGAAGGATTTATTACTTCGATCCGAGCAGCAAGAGTCCCGGTTCTCTGCCTCCAAATGTCTCAGCTGCTGTGAACGGGGTGGCCTTATGCGGAACACTGGCCGGACAACTTTTCTTTGGTTGGATGGGCGACAAACTGGGACGGAAGAAAGTTTATGGAGTAACGCTCATGATCATGGTTATTACTTCCATAGCGTCTGGCCTTTCGTTCGGTAGCACAGCCAAATCCGTAATGACCACGCTCTGCTTTTTCAGATTCTGGCTCGGCTTTGGCATCGGCGGAGATTATCCTTTATCTGCCACCATAATGTCGGAATATGCCAACAAGAAAACCCGAGGGGCGTTCATCGCAGCAGTCTTTGCTATGCAAGGCTTCGGGATTCTTGCCGGCGGTGCGGTGGCAATTATCGTCTCCACAGCATTCAACAAGAAGTACGAACGTCCTGTATATCAGGATGATCCTCGAGGTTCGACTGCTCATGAAGCCGATTATGTGTGGCGGATCATTCTGATGTTCGGAGCTGTTCCGGCTGCTTTGACATACTACTGGCGAATGAAAATGCCGGAAACGGCTCGCTACACTGCTCTCGTCGCAAGAAACGTAAAGCAAGCCGCGGCCGACACGTCCAAGGTTCTTCAGGTAGACGTTGAAGCAGATATCCGAGTAGATGAAGTGGTTGCAAAGAACGACTTGGGGTTCGCTTTATTTTCAAAAGAGTTTGCAAGGCGACATGGCCTACATCTATTGGGGACTGCAAGCACATGGTTTCTGTTCGATATCGCTTTCTACAGCCAA

Fln Alignment:

AllPine_a_rep_c74739___MARNRLEVLNALDVARTQWYHFTAIIIAGMGFFTDAYDLFCISTVTKLLGRIYYFDPSSKSPGSLPPNVSAAVNGVALCGTLAGQLFFGWMGDKLGRKKVYGVTLMIMVITSIASGLSFGSTAKSVMTTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILAGGAVAIIVSTAFNKKYERPVYQDDPRGSTAHEADYVWRIILMFGAVPAALTYYWRMKMPETARYTALVARNVKQAAADTSKVLQVDVEADIRVDEVVAKNDLGFALFSKEFARRHGLHLLGTASTWFLFDIAFYSQ
Q1XG57________________MAKTQLEVLNALDLAKTQWYHFTAIIIAGMGFFTDAYDLFCISTVTKLLGRIYYFE-DGKKPGSLPPNVSAAVNGVALCGTLAGQLFFGWLGDKMGRKKVYGMTLMLMVICSIASGLSFGHTAKSVMTTLCFFRFWLGFGIGGDYPLSATIMSEYANKRTRGAFIAAVFAMQGFGILAGGAVSIIVSAGFKSHFKAPAYQDDPKGSTVDEADFVWRLILMFGAVPAAMTYYWRMKMPETARYTALVERNAKQAAADMSRVMQVDIEEDRQKIDEIATREPSFGLFSAQFAKRHGLHLLGTTSTWLLLDVAYYSQ

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
612	66		33		0.997452
665		20		80	0.995493
773		83		16	0.994512
815			11	88	0.923564
818			11	88	0.991528
856		87		12	0.992554
857		87	12		0.992554
862	12	87			0.992554
864	12			87	0.992554
873	87	12			0.992554
875		12		87	0.992554
879		12		87	0.992554
897		42		57	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain