SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene127949

Length: 487 nt

UniGene Fasta

>sp_v3.0_unigene127949
CGTCGTGACCTTGGCTGTCACTCACCTTGGTTGTCACTCGCAGTTCGGAGATCTGGATAATCAGATGACACTAGTGGATGGATCGACGAAGCCCGTTAAGCAATTCGTGAAAGACTATTTCGGATTCGATCATGACTTTTTGGGAGCAGTAGCAGCTGTAAATGTTGGATTCTGCGTGCTTTTTGGTTTGGTATTCGCACTGGGCGTCAAATACTTGAATTTCCAAAACCGCTAGATGGACTATGGTGGAATTTAAATTCTTTCATTCAGGTTTTTAAGATCATGGAAGCGAGATGGTGAAAAATTAACGTATTGAAATGATTTTTTCCAACAATAAATTTTGTTATTCATGTCAGTCACAGTCACATTTCGACTATTTCGATTTGTAAAAAAATTGTACGATATTTTGAAGGACGATGTCACTGGTATTAGAAATTATCCATAGAAGGTTCGCTATACCAGCATATCAGTATTTACTATTTTGATA

Ace file of the UniGene sp_v3.0_unigene127949

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%

Source	Gene names
Sma3	GSVIVT00034490001; GSVIVT00034493001; GSVIVT00034498001; GSVIVT00034508001; GSVIVT00034512001; LOC_Os01g08260; Os01g0177900; OsI_00628; OsJ_00597; PDR6; POPTRDRAFT_547951; RCOM_1016560; VITISV_005227; VITISV_025103; pdr12;

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Plant PDR ABC transporter associated	IPR013581	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G15210.1	PDR7, ATPDR7 pleiotropic drug resistance 7 chr1:5231552-5236573 REVERSE LENGTH=1442	7.0e-13	46%
RefSeq	Arabidopsis thaliana	NP_172973.1	ABC transporter G family member 35 [Arabidopsis thaliana]	9.0e-13	46%
RefSeq	Populus trichocarpa	XP_002297807.1	predicted protein [Populus trichocarpa]	2.0e-16	58%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACV1

Fln msg: your sequence is shorter than subject: 78 - 412

Fln protein: VVTLAVTHLGCHSQFGDLDNQMTLVDGSTKPVKQFVKDYFGFDHDFLGAVAAVNVGFCVLFGLVFALGVKYLNFQNR*

Protein Length: 79

Fln nts: CGTCGTGACCTTGGCTGTCACTCACCTTGGTTGTCACTCGCAGTTCGGAGATCTGGATAATCAGATGACACTAGTGGATGGATCGACGAAGCCCGTTAAGCAATTCGTGAAAGACTATTTCGGATTCGATCATGACTTTTTGGGAGCAGTAGCAGCTGTAAATGTTGGATTCTGCGTGCTTTTTGGTTTGGTATTCGCACTGGGCGTCAAATACTTGAATTTCCAAAACCGCTAG___ATGGACTATGGTGGAATTTAAATTCTTTCATTCAGGTTTTTAAGATCATGGAAGCGAGATGGTGAAAAATTAACGTATTGAAATGATTTTTTCCAACAATAAATTTTGTTATTCATGTCAGTCACAGTCACATTTCGACTATTTCGATTTGTAAAAAAATTGTACGATATTTTGAAGGACGATGTCACTGGTATTAGAAATTATCCATAGAAGGTTCGCTATACCAGCATATCAGTATTTACTATTTTGATA

Fln Alignment:

AllPine_a_rep_c74692___SQFGDLDNQMTLV-DGSTKPVKQFVKDYFGFDHDFLGAVAAVNVGFCVLFGLVFALGVKYLNFQNR
D5ACV1________________SQLGDLTGFVEVAGEKDTMSVQQFLEGYFGYRHDFLGVVAAVHVGIVILFFSVFAFGIKYLNFQRR

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
123	75		25		1.0
125	12	12		75	0.975346
126	12			87	0.992554
129		12	87		0.992554
131		11	88		0.923776
132	88	11			0.923776
135		87	12		0.992554
137	87	12			0.992554
140	87		12		0.992554
142		11	88		0.923564
147		10		90	0.903503
148	10			90	0.903503
253		25		75	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain