SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene127937

Length: 986 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene127937 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Proteasome subunit beta type n=2 Tax=Picea sitchensis RepID=A9NLJ2_PICSI	-	-	77%
FL-Next	sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	proteasome core complex	GO:0005839	Cellular Component	-
Sma3	threonine-type endopeptidase activity	GO:0004298	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase T1A, proteasome beta-subunit	IPR000243	-	-
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	-
Sma3	Proteasome, beta-type subunit, conserved site	IPR016050	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G31300.2	PBA1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein chr4:15188927-15190935 FORWARD LENGTH=234	69%
RefSeq	Arabidopsis thaliana	NP_001190879.1	proteasome subunit beta type-6 [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002309021.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NLJ2

Fln msg: your sequence is shorter than subject: 209 - 233

Fln protein: MDMDWMNAPHSMGTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYLCRSGSAADSQVVSDYVRYFLHQHIIQLGQPATVKVSANLIRLLSYNNKNMLQTGLIVGGGINMKAEASIQCLLVVQFCSYHLQLEALVVKCVSLAIARDGASGGVVRTVVINSEGVTRNFYPGDKLPLWHEELPLRNSLLQDASSDAEPMHP*

Protein Length: 210

Fln nts: ATGGGACTTCATATAAAAGCTAAACTCTCAGACTGAAATGACATACATCAACCCTTCAAGCTCTGGTCAGAGGCGGACGAGCTTTTGAGTTTAATCTACCACCAGATCCGATTTGGTGATTCCGGCGACGGTTCTTGAGGGCAAGACAAGGGTTTGTACAAGCCTAAAACA_-_ATGGATATGGACTGGATGAATGCCCCTCACTCCATGGGGACAACAATTATCGGAGTGACCTACAATGGAGGAGTGGTGCTCGGAGCTGATTCGCGGACAAGCACAGGAATGTATGTGGCAAATCGAGCTTCAGATAAGATTACTCAACTCACAGATAATGTTTATCTCTGCCGCTCAGGCTCAGCTGCAGATTCCCAGGTGGTCTCTGATTATGTGCGCTATTTCCTTCACCAACACATAATACAACTTGGGCAACCTGCCACTGTGAAAGTCAGTGCGAACTTGATACGGCTATTATCATATAACAACAAGAACATGCTCCAGACTGGCCTCATTGTTGGTGGTGGGATAAATATGAAGGCGGAAGCATCTATTCAGTGCCTCTTGGTGGTACAATTTTGCAGCTACCATTTGCAATTGGAGGCTCTAGTGGTGAAATGTGTTTCTCTGGCCATTGCCAGGGATGGAGCAAGTGGAGGGGTTGTGCGCACTGTTGTTATAAACTCTGAAGGAGTGACAAGGAACTTTTATCCAGGAGACAAACTTCCTCTATGGCATGAAGAATTGCCTCTAAGGAATTCACTATTGCAAGACGCATCAAGCGACGCTGAACCTATGCATCCTTAG___AACTTTTGGCATGCTCCTTTCGTATGACGTGTTTGGTCACGATTTTCACCTTTCATGATGACGTAAAAGCCTTCGAATTGAACATTATTAAACAAATGTACTTTATACACTTTGATATGGAATTCTTTCCTTTTCCAATGTGTTTTTGACGACATGGTGGTTTCTCGGCTTCTTGGTTTCATCAAAAT

Fln Alignment:

AllPine_a_rep_c74622___MDMDWMNAPHSMGTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYLCRSGSAADSQVVSDYVRYFLHQHIIQLGQPATVKVSANLIRLLSYNNKNMLQTGLIVGG-----GINMKAEASIQCLLVVQFC-----SYHL---------------QLEALVVKCVSLAIARDGASGGVVRTVVINSEGVTRNFYPGDKLPLWHEELPLRNSLLQDASSDAEPMHP
A9NLJ2________________MDMDWMNAPHSMGTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYLCRSGSAADSQVVSDYVRYFLHQHIIQLGQPATVKVTANLIRLLSYNNKNTLETGLIVGGWDKYEGGSIYGVPLGGTMLQLPFAIGGSGSSYLYGFLDQAWKEGMSKDEAEALVVKSVSLAIARDGASGGVVRTVVINSEGVTRNFYPGDKLPLWHEELPLRNSLLEEASSEAEPMHP

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
288	80			20	0.995493
289		20		80	0.995493
292	80		20		0.995493
294	80	20			0.995493
328	75			25	0.996473
329	75		25		0.996473
342		50		25	0.995533
403		66	33		0.997452
404	66		33		0.997452
405	66	33			0.997452
406		33		66	0.997452
410	66			33	0.997452
411	66			33	0.997452
412	66	33			0.997452
415			66	33	0.997452
419			66	33	0.997452
423			66	33	0.997452
425	66	33			0.997452
426	66	33			0.997452
427	66	33			0.997452
878	12		87		0.992554
882		12		87	0.992554
883		87		12	0.992554
885		87	12		0.992554
889	87		12		0.992554
919	87		12		0.992554
959	66	22	11		0.999999
960		22		77	0.999999
961	22	33	44		1.0
962		33		66	1.0
964	85	14			0.993536
965		14		71	0.984337
966	25			75	0.996481

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain