SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene127899

Length: 1392 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene127899 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Annexin P35 n=1 Tax=Elaeis guineensis RepID=B3TLY9_ELAGV	-	-	0.0	59%
FL-Next	sp=Annexin; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Sma3	Annexin	-	-	2.595e-33	-

Source	Gene names
Sma3	80A08_19; 80A08_20; AN34; AN35; ANN1; ANN2; ANN3; ANN6; ANN7; ANNAT1; ANNAT2; ANNAT3; ANNAT6; ANNAT7; ANX23-ATH; AT1G35720; ATOXY5; Ann1; AnnGh1; AnnGh2; Anx1; Anx3; AnxLt1; At1g35720; At2g38760; At5g10220; At5g10230; At5g12380; At5g65020; B1111E11.5; F14

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	calcium-dependent phospholipid binding	GO:0005544	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	response to osmotic stress	GO:0006970	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	polysaccharide transport	GO:0015774	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Annexin	IPR001464	-	-
Sma3	Annexin, plant	IPR009118	-	-
Sma3		IPR015472	-	-
Sma3	Annexin repeat, conserved site	IPR018252	-	-
Sma3	Annexin repeat	IPR018502	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G35720.1	ANNAT1, OXY5, ATOXY5 annexin 1 chr1:13225304-13226939 FORWARD LENGTH=317	53%
RefSeq	Arabidopsis thaliana	NP_174810.1	annexin D1 [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002302291.1	predicted protein [Populus trichocarpa]	56%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNL2

Fln msg:

Fln protein: MSTITVPVPTPTPTEDSERLRKAVEGWGTDEKSIIQILGHRTAAQRKFIRQIYFQLYKEDLLKRLESELSSHFEKAVFRWVLDPAERDAVICHDAIKKWNAKDISLLEISSARSSAELLMVRQAYHIRYKKSLEEDVAEHISGNFRKLLVALVSSYRYEGPEVDMRLASSEAKKLNESITSRKDNYEELIRIISTRSKAQLNATFNCYKDAYGHHINKALKTQVPEDFQDAVRVLINCICSTEKHFSKVLRLAIGGLRTDEDALTRVVVTRAEVDMKHIKEAYAKRTSKTLEQAIASDTSGDYREFLLTLIGKDHA*

Protein Length: 318

Fln nts: CGTCGTGACCTTGGCTATGGGGACGTTACAATGGGCATTCTTTTGCCAAATGGAAAAAAGAATTAGTCGGTGTGAGCGTCAAATAGGACAACCAGCGGCTGTTTTGTTGAGCTACTCGATTTTGCTAATTCAAGAAATTCATCAGCTATAAATTGAGGCGTTTGATTTCGTTTTAAGATACATTTTGGTGGAGTTGGTCATCCAGCATTGCTGAAGATACTGTGCAGGATATTTGATTTCTCAAGAAG_-_ATGTCAACAATTACAGTGCCAGTGCCAACACCGACCCCAACTGAAGACTCTGAACGCCTGAGGAAGGCTGTTGAAGGGTGGGGCACGGATGAGAAGTCAATCATACAAATATTAGGACACAGAACTGCAGCACAACGCAAATTTATCCGGCAAATTTATTTTCAACTGTACAAAGAGGATCTCTTGAAGCGATTAGAATCTGAGCTTTCGAGTCATTTTGAGAAAGCTGTGTTCCGTTGGGTACTAGATCCTGCTGAACGTGATGCGGTCATATGTCATGATGCAATAAAGAAGTGGAATGCAAAGGATATATCGCTTTTAGAAATTTCCAGTGCTCGATCTTCAGCTGAACTATTGATGGTGAGGCAAGCATATCATATTCGGTACAAAAAGTCCCTCGAAGAAGATGTGGCTGAACATATAAGTGGAAACTTCCGCAAGTTGCTGGTAGCACTTGTAAGTTCATATCGGTATGAAGGTCCAGAAGTGGATATGCGTCTTGCAAGTTCTGAAGCAAAGAAGCTAAATGAATCTATAACGAGCAGAAAAGATAATTACGAAGAACTCATTCGAATAATAAGTACAAGGAGCAAAGCTCAATTGAATGCTACATTCAATTGTTACAAGGATGCGTATGGTCATCATATTAACAAGGCCTTGAAGACTCAAGTACCTGAAGATTTCCAAGATGCTGTGCGAGTTTTGATCAATTGTATTTGCTCTACTGAAAAACACTTCTCAAAGGTTTTGCGCTTAGCAATAGGAGGACTCAGAACAGATGAAGATGCACTTACACGGGTGGTTGTAACACGCGCGGAAGTTGACATGAAACATATCAAAGAGGCATATGCTAAGAGGACCAGCAAGACTTTGGAACAGGCAATAGCATCCGACACCTCCGGAGATTATCGGGAATTTTTGCTTACATTGATAGGCAAAGATCATGCTTAA___GCTCATTCATCCCGATGACCTCTTTTCAAGCATTTATGTCTGCAATTTTAAGCTTTAGAATCTTAACAATTTTAAGCACACACCGTGTAGACACTCATTTTTCTTTGGGTTGTTTGAAAGTTGTGTTGACTCACTGGATCATAAACCTGTAAGTTTGAACATTGTAATTTCATTACTAGATTCTAAGTATGTA

Fln Alignment:

AllPine_a_rep_c74212___MSTIXXXXXXXXXTEDSERLRKAVEGWGTDEKSIIQILGHRTAAQRKFIRQIYFQLYKEDLLKRLESELSSHFEKAVFRWVLDPAERDAVICHDAIKKWNAKDISLLEISSARSSAELLMVRQAYHIRYKKSLEEDVAEHISGNFRKLLVALVSSYRYEGPEVDMRLASSEAKKLNESITSRKDNYEELIRIISTRSKAQLNATFNCYKDAYGHHINKALKTQVPEDFQDAVRVLINCICSTEKHFSKVLRLAIGGLRTDEDALTRVVVTRAEVDMKHIKEAYAKRTSKTLEQAIASDTSGDYREFLLTLIGKDHA
A9NNL2________________MSTIIVPTPTPTPVEDSESLRKAFEGWGTNEKLIIEILGHRTAAQRRAIRQAYTQLYEEDFLKRLQSELTREFERALFLWSLDPPERDALLAHESIKKWSPKNRSLIEISCARSSSELWLVRQAYHVRYKKSLEEDIASHTQGDFRKLLVQLVSSYRYEGPEVDMRLAKSEAKQLHEAIEDKAFGNEEFIRIITTRSKAQLNATFNNYKDEYGHHINKDLKNEKPEEFLESLRVVIKCICFPERYFAKVLRLAIDKLGTEEEALIRVVVTRAETDMNNIKEEYHKRTSKTLEHAIAADTSGYYEEFLLTLIGKEQS

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
688		85	14		0.993533
689			14	85	0.993533
781	12		87		0.992554
902	12		87		0.992554
1097		42	57		1.0
1103	60		40		1.0
1160	11		88		0.923564
1169	66		33		1.0
1175		66		33	1.0
1213	87	12			0.992554
1217	83			16	0.994512
1223		16	16		0.988816
1224	83	16			0.994513
1225		16		66	0.988813
1226		80	20		0.995493
1227	16			83	0.994516
1228			20	80	0.995493
1230	80	20			0.995505
1232	80		20		0.995505
1234		25	75		0.996473
1238	80		20		0.995497
1243	80		20		0.995497
1246	16		83		0.994513
1340		75		25	0.996475
1384		66	33		0.997461
1385	33	66			0.997461
1386		66	33		0.997461
1387		66		33	0.997461
1388	33		33		0.997689
1390		33		66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain