SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene127875

Length: 1570 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene127875

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pseudotzain n=3 Tax=Pinaceae RepID=Q40922_PSEMZ	-	-	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Sma3	Cysteine proteinase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	2.143e-11	-
Sma3	Hydrolases, Acting on peptide bonds (peptide hydrolases), Cysteine endopeptidases.	EC:3.4.22.-	-	2.386e-38	-

Source	Gene names
Sma3	AT4g23520; AsNODf32; At1g09850; At1g20850; At1g47128; At3g19390; At3g19400; At3g19400/MLD14.12; At3g48350; At3g48350/T29H11_130; At4g35350; At4g36880; At5g43060; At5g43060/MMG4.7; At5g50260; B1417F08.21; BoCP3; BrCP3; C14; C7A10.480; CEP1; CHLREDRAFT_2060

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	endoplasmic reticulum lumen	GO:0005788	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	cytoplasmic vesicle	GO:0031410	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	cysteine-type endopeptidase activity	GO:0004197	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	developmental programmed cell death	GO:0010623	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Anaphylatoxin/fibulin	IPR000020	-	-
Sma3	Granulin	IPR000118	-	-
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase C1A, papain C-terminal	IPR000668	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Ribosomal protein L5	IPR002132	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Phospholipase A2, active site	IPR013090	-	-
Sma3	Peptidase C1A, papain	IPR013128	-	-
Sma3	Proteinase inhibitor I29, cathepsin propeptide	IPR013201	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3		IPR018069	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-
Sma3	Ribosomal protein L29, conserved site	IPR018254	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G47128.1	RD21, RD21A Granulin repeat cysteine protease family protein chr1:17283139-17285609 REVERSE LENGTH=462	69%
RefSeq	Arabidopsis thaliana	NP_564497.1	cysteine proteinase RD21a [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002326950.1	predicted protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV34

Fln msg: your sequence is shorter than subject: 387 - 452

Fln protein: KDNFLYIHGHNQGNRSYKLGLNKFADLSHEEFKATYLGAKLDTKKRLLRSPSPRYQYSDGEDLPKSIDWREKGAVAPVKDQGACGSCWAFSTVAAVEGINQIVTGDLISLSEQELVDCDTSYNQGCNGGLMDYAFEFIINNGGLDSEEDYPYTAYDGSCDAYRKNAHVVTIDDYEDVPENDEKSLKKAAANQPISVAIEASGREFQFYESGVFTSACGTQLDHGVTLVGYGSESGTDYWIVKNSWGKSWGEEGFIRLQRNLEEASTGICGIAMEASYPVKKGANPPNPGPSPPSPIKPPTVCDNYYSCPQSNTCCCMYDFGGYCYAWGCCPLDSATCCDDHYSCCPSEYPVCDLDGGTCLKSSKDPFGVKMLKRTPAKPYWAAAAA*

Protein Length: 388

Fln nts: CAAAGACAATTTTCTGTATATTCACGGGCACAACCAGGGGAATCGGTCCTACAAACTGGGTCTGAACAAGTTTGCAGATCTGAGCCACGAGGAATTCAAGGCCACATATCTGGGTGCCAAGCTGGATACCAAGAAACGCTTGCTGAGGTCTCCCAGCCCTCGATACCAGTATTCCGACGGCGAAGATTTGCCAAAGTCCATTGACTGGAGAGAAAAGGGAGCCGTGGCTCCCGTGAAGGACCAGGGTGCATGTGGAAGTTGTTGGGCGTTCTCAACTGTGGCGGCCGTTGAAGGAATCAATCAAATCGTGACCGGCGATTTGATTTCGCTGTCCGAGCAAGAACTGGTGGACTGTGATACTTCTTACAACCAAGGATGCAACGGTGGCCTCATGGATTACGCTTTTGAGTTTATCATAAACAATGGTGGACTTGACAGCGAGGAGGATTACCCCTACACGGCCTACGATGGATCATGTGACGCTTACCGGAAAAATGCCCATGTGGTGACAATCGATGACTACGAAGATGTGCCTGAAAACGATGAGAAATCGTTGAAGAAGGCTGCGGCTAATCAGCCAATTAGCGTTGCCATCGAAGCCAGCGGGAGGGAGTTCCAGTTTTACGAATCTGGTGTGTTCACTAGCGCCTGCGGAACCCAGCTAGACCATGGCGTGACTCTGGTAGGCTATGGGTCAGAGTCGGGCACAGACTACTGGATTGTTAAGAATTCTTGGGGAAAGAGCTGGGGAGAGGAGGGATTCATCAGACTGCAGAGGAACCTTGAAGAAGCTTCAACAGGTATTTGTGGTATAGCAATGGAGGCATCTTACCCTGTAAAGAAGGGTGCCAACCCTCCAAACCCTGGGCCTTCTCCCCCAAGCCCAATAAAGCCTCCCACTGTGTGTGACAACTATTATTCCTGCCCTCAGAGCAACACCTGCTGCTGCATGTATGACTTCGGAGGTTACTGCTATGCCTGGGGTTGCTGCCCTCTTGATTCGGCCACCTGCTGTGATGATCACTACAGCTGCTGCCCTAGCGAGTACCCAGTCTGCGATCTTGATGGTGGGACCTGCCTCAAGAGTAGCAAGGATCCATTTGGAGTGAAGATGCTGAAGCGTACCCCAGCCAAACCCTACTGGGCTGCTGCTGCCGCCTGA___ATAGTCGCTGATGGTCTTTTGCAAACCTGATACATAAAAAAAGGGTTTGTGTACAAAATACTTCTGCTATGTCCGTGTCTGGCTTGGCTTCTCCAGTTGGATCAGAAACTGCTCCTGTCCTGTCATCAATTCTCTCCCTTCTCATTTATACATGTACAGCGCTTGGTTATGTTAGCCATTGTTATTGTTTGTTCTGAGGCTTATAGTCTATGAACAAAACAGCTTTTATGATTACGGAAGCTATTATAGATCTTAACTCCAGGAGTTAGGTAATGTTCCATATTTTTCAATTGTTATTGTTATTTCAGGTCAGTAAGATTATTCCCAACCTGGGTGCAAAAGGTTCAGGTGTAATCCCCCATTGTTCTGTGTACTATTTGGAAATTAATATCTATTACTCTTCATAGT

Fln Alignment:

AllPine_a_rep_c74003___KDNFLYIHGHNQGNRSYKLGLNKFADLSHEEFKATYLGAKLDTKKRLLRSPSPRYQYSDGEDLPKSIDWREKGAVAPVKDQGACGSCWAFSTVAAVEGINQIVTGDLISLSEQELVDCDTSYNQGCNGGLMDYAFEFIINNGGLDSEEDYPYTAYDGSCDAYRKNAHVVTIDDYEDVPENDEKSLKKAAANQPISVAIEASGREFQFYESGVFTSACGTQLDHGVTLVGYGSESGTDYWIVKNSWGKSWGEEGFIRLQRNLEEASTGICGIAMEASYXXXXXXXXXXXXXXXXXXXXXXTVCDNYYSCPQSNTCCCMYDFGGYCYAWGCCPLDSATCCDDHYSCCPSEYPVCDLDGGTCLKSSKDPFGVKMLKRTPAKPYW
A9NV34________________KDNFLYIHEHNQGNRSYKLGLNQFADLSHEEFKATYLGAKLDTKKRLSRPPSRRYQYSDGEDLPESIDWREKGAVTSVKDQGSCGSCWAFSTVAAVEGINQIVTGDLISLSEQELVDCDTSYNQGCNGGLMDYAFEFIINNGGLDSEEDYPYTAYDGSCDSYRKNAHVVTIDDYEDVPENDEKSLKKAAANQPISVAIEASGREFQFYDSGVFTSTCGTQLDHGVTLVGYGSESGTDYWTVKNSWGKSWGEEGFIRLQRNIEVASTGMCGIAMEASYPVKKGANPPNPGPSPPSPIKPPTVCDNYYSCPESNTCCCMYDFGGYCYAWGCCPLDSATCCDDHYSCCPNEYPVCDLDGGTCLKSSKDPFGVKMLKRTPAKPYW

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
1107		87	12		0.992554
1108		87	12		0.992554
1248	11			88	0.923564
1252			11	88	0.991528
1253			88	11	0.991528
1254			88	11	0.923564
1256			11	88	0.923564
1259			88	11	0.991528
1373		12		87	0.992554
1459		16		83	0.994512
1460		83		16	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain