SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene127871

Length: 1208 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene127871 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Vacuolar-processing enzyme; Short=VPE; Flags: Precursor emb\|CAA87720.1\| cystein proteinase (by similarity) [Citrus sinensis] prf\|\|2208463A vascular processing protease	-	-	0.0	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Sma3	Legumain	-	-	2.849e-25	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on peptide bonds (peptide hydrolases), Cysteine endopeptidases.	EC:3.4.22.-	-	3.873e-19	-
Sma3	Legumain.	EC:3.4.22.34	-	1.282e-24	-

Source	Gene names
Sma3	At1g62710; At2g25940; At4g32940; B1064G04.34; CHLREDRAFT_196085; F23N19.7; F26P21.60; GSVIVT00007285001; GSVIVT00012129001; GSVIVT00029598001; GSVIVT00032155001; Glup3; NP1; NbVPE-1a; NbVPE-1b; NtVPE-1a; NtVPE-1b; NtVPE-2; NtVPE-3; OJ1282_H11.16-1; OJ1282

Source	GOs	Term	Type	Identity
Sma3	lytic vacuole	GO:0000323	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	cysteine-type endopeptidase activity	GO:0004197	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase C13, legumain	IPR001096	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G32940.1	GAMMA-VPE, GAMMAVPE gamma vacuolar processing enzyme chr4:15900557-15903161 REVERSE LENGTH=494	58%
RefSeq	Arabidopsis thaliana	NP_195020.1	vacuolar-processing enzyme gamma-isozyme [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002324151.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRB9

Fln msg: Overlapping hits, possible frame ERROR between 157 and 153, your sequence is shorter than subject: 293 - 493

Fln protein: VVTLAVTQYIEACESGSIFEGLLPTDMNIYATTASNAEENSWGTYCPGMDxxxSSRYDTCLGDLYSVAWMEDSEMNNLKEETLLQQYDLVKRRTSNHNTYMSGSHVMQYGNLTISQEELYLYMGFDSANSNASLVLENSLLLERTAAKAINQRDADLLYMWQKYKKSKEDSPERFTAQTQLLEFMAHRMHVDKSVKLVGNLLFGPEKGSAVLKAVRPQGEPLVDDWDCLKKMVRTFERHCGSLAQYGMKHMRALANICNEGISVDTVATVSAEACTQFPAGSWSSLQRGFSA*

Protein Length: 294

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATATTGAAGCATGTGAAAGTGGAAGTATTTTTGAAGGTCTGCTGCCAACAGACATGAACATATATGCTACAACGGCATCAAATGCCGAGGAGAACAGCTGGGGAACTTACTGTCCTGGAATGGACxxxxxxxxxTCCTCCAGATATGACACCTGTCTGGGAGATCTCTATAGTGTTGCATGGATGGAAGACAGTGAAATGAACAACTTGAAAGAGGAAACCTTGTTGCAACAATATGACCTGGTGAAGCGCAGAACCTCCAACCATAATACATACATGTCTGGTTCTCATGTTATGCAATATGGCAACCTCACTATCAGCCAAGAGGAATTGTATCTATATATGGGATTTGACTCTGCCAATTCTAATGCTAGTTTGGTCCTTGAGAACTCACTACTCTTAGAAAGGACGGCAGCCAAGGCAATTAATCAACGAGATGCAGATCTTCTTTACATGTGGCAAAAGTATAAGAAATCAAAGGAGGACTCTCCGGAAAGGTTCACTGCACAGACACAATTGTTGGAATTCATGGCTCATCGTATGCATGTAGACAAGAGTGTAAAGCTTGTTGGAAATCTTTTATTTGGACCAGAAAAGGGCTCTGCTGTTCTAAAAGCTGTGAGACCTCAAGGGGAACCTTTGGTAGATGACTGGGACTGTCTTAAGAAAATGGTACGGACTTTTGAAAGACACTGTGGATCTCTGGCCCAGTATGGCATGAAACACATGCGTGCTCTAGCAAATATATGCAATGAAGGTATCAGCGTGGATACTGTGGCCACAGTTTCTGCTGAAGCATGCACTCAATTTCCGGCTGGGTCCTGGAGTTCCCTTCAAAGAGGGTTCAGCGCTTGATAATTCAGGGCTTTCAAATTTCTTCCAGTGAGTGCTTATCAAAATCTCGAGAGACAATTTCCAAGGATGAATGTTCTGTACATAAAAAAAAACATATATGCTATGACACCTTGTTGCTTTGTTGTTTGCTCAAAGAAAGAGAAAATGTGCAGTCATATGCCCATGGACCGGCATCTGAGCGAAAATTCTTTCTTTATCTACTGCATGCAGAAATTGGAATATATCATAGGGTGGGGCTTATGCATTTCTTTAGTGATCATCCCATTGCATATCTTGCAGTAAATGTGTATATTTCAAGTAGTTGAATAATATATTTGTATTAAGCTGCGA

Fln Alignment:

AllPine_a_rep_c73931___YIEACESGSIFEGLLPTDMNIYATTASNAEENSWGTYCPGMDPxLSSRYDTCLGDLYSVAWMEDSEMNNLKEETLLQQYDLVKRRTSNHNTYMSGSHVMQYGNLTISQEELYLYMGFDSANSNASLVLENSLLLERTAAKAINQRDADLLYMWQKYKKSKEDSPERFTAQTQLLEFMAHRMHVDKSVKLVGNLLFGPEKGSAVLKAVRPQGEPLVDDWDCLKKMVRTFERHCGSLAQYGMKHMRALANICNEGISVDTVATVSAEACTQFPAGSWSSLQRGFSA
B8LRB9________________YVEACESGSIFEGLLPTDLNIYVTTASNAEENSWGTYCPGMDPxPPPEYDTCLGDLYSVAWMEDSEINNLKEETLLQQYDLVKLRTSNHNTYMSGSHVMQYGNITISQEELYLYMGFDSANSNASLVLENSPLLEKTEAKAINQRDADLLYMWQKYKKSKEDSPERLTAQTQLLEFMAHRMHVDKSVKLVGNLLFGPEKGPAVFNAVRPQGEPLVDDWDCLKKMVRTFEGHCGSLAQYGMKHMRALANICNEGISMDTMATVSAEACTQFPAGSWSSLQRGFSA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain