SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene127860

Length: 1200 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene127860

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_7.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7THM2_VITVI	-	-	0.0	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Sma3	Putative ripening-related protein	-	-	1.009e-09	-

Source	Gene names
Sma3	At2g32150; At2g32150/F22D22.10; At5g02230; At5g59480; At5g59490; CHLREDRAFT_150728; F21F14.210; GSVIVT00019963001; GSVIVT00021335001; GSVIVT00024290001; GSVIVT00028217001; LOC_Os03g16670; LOC_Os03g49440; OSJNBa0096I06.24; Os01g0973000; Os03g0273800; Os03g

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Haloacid dehalogenase/epoxide hydrolase	IPR005833	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	HAD-superfamily hydrolase, subfamily IA, variant 3	IPR006402	-	-
Sma3	Pyrimidine 5-nucleotidase	IPR010237	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G02230.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein chr5:449132-450507 FORWARD LENGTH=280	72%
RefSeq	Arabidopsis thaliana	NP_850754.1	haloacid dehalogenase-like hydrolase domain-containing protein [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002302699.1	predicted protein, partial [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NL51

Fln msg: Overlapping hits, possible frame ERROR between 727 and 643,

Fln protein: MVLDHKRRVTEQGSRYDCLLFDMDDTLYPLSSGLAAACTNNIRDYVNKKLGVEKSRVPDFTRELYKTYGTTMAGLRAVGYEFDYDDYHSFVHGRLPYENLKPDPVLKNLLLSMPQRKIIFTNGDKVHAAKVLNRLGLKDCFEGIICFETLNPPSKIAEKIINGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNADPQRTIFFDDSSRNIAAGKRAGLHTVLVGTSVRTEGADFALECIHNIREALPEIWEEGDAKSSKNVVVSRETIENVVTA*

Protein Length: 276

Fln nts: ATGGGGCCCCCTCAAACATCGTTAGCTTGTTTATGCTCTTCTGTCTTACATTTTATTTTTCGAGTCCCTGTTTCTTTCAACATACATTGCCTCCTTCCCTATTGCATTCACTCTCCTCTTCCCCATATTCAACATTCCTGAGTGATCAATA_-_ATGGTGCTGGATCACAAACGACGCGTGACAGAGCAGGGGTCTCGATATGACTGCCTTCTGTTTGATATGGATGACACATTATATCCCTTAAGCTCCGGACTAGCTGCAGCATGCACCAACAACATCAGAGATTATGTGAATAAAAAACTGGGAGTTGAAAAGAGCAGAGTCCCAGACTTCACCAGAGAGTTGTATAAAACTTATGGGACAACCATGGCTGGACTCAGGGCAGTGGGCTATGAATTTGACTATGACGATTACCACAGTTTTGTTCACGGAAGATTGCCGTATGAGAATCTTAAACCAGATCCTGTGCTGAAGAATTTGTTATTAAGCATGCCTCAAAGGAAAATTATATTTACAAATGGTGACAAAGTTCATGCTGCAAAGGTCCTTAACAGGCTGGGATTGAAAGATTGCTTTGAGGGCATAATATGCTTTGAGACACTTAATCCTCCTTCAAAAATTGCTGAAAAAATAATAAACGGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAATGCTGATCCACAAAGAACGATTTTCTTTGACGACAGTTCCCGGAATATAGCCGCAGGAAAGCGTGCAGGCCTGCATACTGTATTGGTGGGCACTTCGGTCCGAACAGAGGGAGCAGATTTTGCACTTGAATGTATTCACAACATTAGAGAAGCCCTGCCTGAGATATGGGAAGAAGGTGATGCAAAGAGCTCTAAGAATGTTGTGGTTTCAAGGGAAACTATTGAAAATGTTGTCACTGCATAA___GCCATAGTCTGAGTGAAGTAATGGGGAACTGAGCGTTTGCCTCTACTTATAGAGGAAACTCCTATTCTCTGTAATCATGGGTTTTGCCTCTACTTATAGAGGAAACTCCTATTCTCTGTAATCATGGGTTTTGCTTCTAGCCAAAAGAAAATCCCATTGTCTTCAACCTTGCTAAAGTGTGTAAACGGGTCGAGACCGCATCCATGAAATAATATGCTTGTTTGG

Fln Alignment:

AllPine_a_rep_c73791___MVLDHKRRVTEQGSRYDCLLFDMDDTLYPLSSGLAAACTNNIRDYVNKKLGVEKSRVPDFTRELYKTYGTTMAGLRAVGYEFDYDDYHSFVHGRLPYENLKPDPVLKNLLLSMPQRKIIFTNGDKVHAAKVLNRLGLKDCFEGIICFETLNPPSKIAEKIINGIxxxxxxxxxxxxxxxxxxxxxxxxxxxxANADPQRTIFFDDSSRNIAAGKRAGLHTVLVGTSVRTEGADFALECIHNIREALPEIWEEGDAKSSKNVVVSR---ETIENVVTA
A9NL51________________MALDENRRVTDQRPRYDCLLFDLDDTLYPLSSGLAAACTNNIGDYVNQKLGVEKSRVPDLSRELYKTYGTTMAGLRAIGYEFDYDDYHSFVHGRLPYENLKPDPVLKNLLLSMPQRKIIFTNSDKVHAAKVLNRLGLEDCFEGIICFETLNPPN-ITESNNEWGxxxxxxxxxxxxxxxxxxxxxxxxxxxxANADPQRTIFFDDSPRNIAAGKCAGLHTVLVGTSVRTEGADFALESIHNIREALPEIWEEEDTESAKNVVRSRGAGATIETVVTA

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
68	33	66			0.997452
78	12			87	0.992554
79		87		12	0.992554
80	87		12		0.992554
81	87		12		0.992554
82		87	12		0.992554
83	87		12		0.992554
185	12		87		0.992554
252		66		33	1.0
254	88		11		0.923564
333	87		12		0.992554
342		50		50	1.0
438	20	80			0.995493
440	20		80		0.995493
944			33	66	0.997476
998	75		25		0.996479
1003			25	75	0.996474
1029			33	66	0.997452
1172		75		25	0.996478

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain