SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene127798

Length: 487 nt

UniGene Fasta

>sp_v3.0_unigene127798
AGTGCATCTGGGTGTGAGCGCAATTGGTCTGTCTTTGAGAGGATTCACACAAAGAAGAGAAACCGTTTGGATCAAAAACGGTTGAATGATCTAGTTTATGTCCAATACAACCTTCGGCTTAGACGAAACCAATTGATGAACAAAAGACCTGATTCAGATCCCATTGTGTTGGAAGACATTGATCCAACATCAGATTGGGTAGTGGAGAGTTGTCCACCAGAGTTTGATCCTGATGAGGATCTTGATCAACTTGAAGATGTTGGTCAACTTCAGCTTGTTCAGTTGAATGCGGATCCCAATCCACCAGCCTCAGTCTCACAGCCAGCAAGGACTCCAGTTGAAGCCGAAGGTGCTTCCTCTGCCCAGCCACGACAGAAGCGCAGCCTCATATCTACTCTATCTCAACTTGCATCTGCTGCACAGCCTGCTAGTGGTACTTGTACCACTTCTACAGTTGCAGTTGGAGACGATGATGATGAGGAGCCAT

Ace file of the UniGene sp_v3.0_unigene127798

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative transposase n=1 Tax=Arabidopsis thaliana RepID=O81190_ARATH	-	-	9.0e-18	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%

Source	Gene names
Sma3	GSVIVT00002367001; GSVIVT00005187001; GSVIVT00006112001; GSVIVT00007208001; GSVIVT00007669001; GSVIVT00010659001; GSVIVT00012114001; GSVIVT00012956001; GSVIVT00013610001; GSVIVT00016792001; GSVIVT00017198001; GSVIVT00018900001; GSVIVT00019252001; GSVIVT00

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	drug transmembrane transporter activity	GO:0015238	Molecular Function	-
Sma3	antiporter activity	GO:0015297	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	drug transmembrane transport	GO:0006855	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3	Zinc finger, BED-type predicted	IPR003656	-	-
Sma3	Ubiquitin interacting motif	IPR003903	-	-
Sma3	Domain of unknown function DUF250	IPR004853	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3		IPR011523	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G33406.1	hAT dimerisation domain-containing protein / transposase-related chr5:12676126-12678403 REVERSE LENGTH=509	3.0e-17	54%
RefSeq	Arabidopsis thaliana	NP_680299.4	hAT family dimerization domain-containing protein [Arabidopsis thaliana]	3.0e-17	54%
RefSeq	Populus trichocarpa	XP_002318364.1	predicted protein [Populus trichocarpa]	3.0e-17	48%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADK7

Fln msg: STOP codon was not found. Distance to subject end: 17 aas, your sequence is shorter than subject: 162 - 250

Fln protein: SASGCERNWSVFERIHTKKRNRLDQKRLNDLVYVQYNLRLRRNQLMNKRPDSDPIVLEDIDPTSDWVVESCPPEFDPDEDLDQLEDVGQLQLVQLNADPNPPASVSQPARTPVEAEGASSAQPRQKRSLISTLSQLASAAQPASGTCTTSTVAVGDDDDEEP

Protein Length: 163

Fln nts: AGTGCATCTGGGTGTGAGCGCAATTGGTCTGTCTTTGAGAGGATTCACACAAAGAAGAGAAACCGTTTGGATCAAAAACGGTTGAATGATCTAGTTTATGTCCAATACAACCTTCGGCTTAGACGAAACCAATTGATGAACAAAAGACCTGATTCAGATCCCATTGTGTTGGAAGACATTGATCCAACATCAGATTGGGTAGTGGAGAGTTGTCCACCAGAGTTTGATCCTGATGAGGATCTTGATCAACTTGAAGATGTTGGTCAACTTCAGCTTGTTCAGTTGAATGCGGATCCCAATCCACCAGCCTCAGTCTCACAGCCAGCAAGGACTCCAGTTGAAGCCGAAGGTGCTTCCTCTGCCCAGCCACGACAGAAGCGCAGCCTCATATCTACTCTATCTCAACTTGCATCTGCTGCACAGCCTGCTAGTGGTACTTGTACCACTTCTACAGTTGCAGTTGGAGACGATGATGATGAGGAGCCAT

Fln Alignment:

AllPine_a_rep_c73416___SASGCERNWSVFERIHTKKRNRLDQKRLNDLVYVQYNLRLRRNQLMNKRPDSDPIVLEDIDPTSDWVVESCPPEFDPDEDLD--QLEDVGQLQLVQLNAD----PNPPASVSQPARTPVEA
D5ADK7________________SAFGCERNWSVFERIHTKKRNRLEQKRLNDIVFVQCNLRLRRNQLMNKTPESNNIFLDDIDPSSNWVVETQPIAFD-HEDLSWMDLDPEPHQENVATNAAPVSLPSGPGESSQAQNTLVQS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain