SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene127737

Length: 1014 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene127737

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H2AX n=7 Tax=Spermatophyta RepID=H2AX_PICAB	-	-	3.0e-20	98%
FL-Next	sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Sma3	Histone H2A	-	-	0.0	-

Source	Gene names
Sma3	6A06; A34; At1g08880; At1g51060; At1g52740; At1g54690; At2g38810; At3g20670; At3g54560; At4g27230; At5g02560; At5g27670; At5g54640; At5g59870; B1377B10.25; CHLREDRAFT_100147; CHLREDRAFT_100223; CHLREDRAFT_107113; CHLREDRAFT_109409; CHLREDRAFT_112398; CHLR

Source	GOs	Term	Type	Identity
Sma3	nucleosome	GO:0000786	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	nucleosome assembly	GO:0006334	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	regulation of flower development	GO:0009909	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Histone H2A	IPR002119	-	-
Sma3	BSD	IPR005607	-	-
Sma3	Histone core	IPR007125	-	-
Sma3	Histone-fold	IPR009072	-	-
Sma3	Alpha/beta hydrolase fold-3	IPR013094	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G54690.1	HTA3, H2AXB, G-H2AX, GAMMA-H2AX gamma histone variant H2AX chr1:20414607-20415206 REVERSE LENGTH=142	4.0e-25	94%
RefSeq	Arabidopsis thaliana	NP_172363.1	putative histone H2AXa [Arabidopsis thaliana]	6.0e-25	94%
RefSeq	Populus trichocarpa	XP_002328535.1	histone 2 [Populus trichocarpa]	8.0e-26	96%

Full-Lengther Next Prediction

SSRs (tot: 1)

Start position	End position	Sequence	Length
101	263	TATTTTGATTGTGAAGAGTTTTAAAGTGGGTTGTGTATATTGCAGGTGCTTGAG TATTTTGATTGTGAAGAGTTTTAAAGTGGGTTGTGTATATTGCAGGTGCTTGAG TATTTTGATTGTGAAGAGTTTTAAAGTGGGTTGTGTATATTGCAGGTGCTTGAG T	163

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain