SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene127686

Length: 599 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene127686

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative PTR2 family peptide transporter protein [Arabidopsis thaliana]	-	-	0.0	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Sma3	Peptide transporter 1	-	-	2.933e-22	-

Source	Gene names
Sma3	At1g62200; At2g02040; At2g40460; At3g54140; At5g01180; At5g46040; At5g46050; B1026C12.10; B1065G12.20; B1377B10.10; F14H20.11; F24B22.100; F7J8_160; GSVIVT00001828001; GSVIVT00001842001; GSVIVT00009628001; GSVIVT00014519001; GSVIVT00020319001; GSVIVT00021

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	high affinity oligopeptide transporter activity	GO:0015334	Molecular Function	-
Sma3	dipeptide transporter activity	GO:0042936	Molecular Function	-
Sma3	tripeptide transporter activity	GO:0042937	Molecular Function	-
Sma3	oligopeptide transport	GO:0006857	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	hyperosmotic salinity response	GO:0042538	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-
Sma3	dipeptide transport	GO:0042938	Biological Process	-
Sma3	tripeptide transport	GO:0042939	Biological Process	-
Sma3	response to leucine	GO:0043201	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Legume lectin, alpha chain, conserved site	IPR000985	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G40460.1	Major facilitator superfamily protein chr2:16897123-16901171 FORWARD LENGTH=583	55%
RefSeq	Arabidopsis thaliana	NP_181578.1	putative peptide/nitrate transporter [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002325913.1	predicted protein [Populus trichocarpa]	54%

Full-Lengther Next Prediction

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
294		33		66	1.0
488	40		60		1.0
493	20	80			0.995493
494		20	80		0.995493
495	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain