SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene127651

Length: 803 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene127651

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Lipoxygenase n=1 Tax=Picea sitchensis RepID=C0PT31_PICSI	-	-	86%
FL-Next	sp=Lipoxygenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Sma3	Lipoxygenase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Lipoxygenase.	EC:1.13.11.12	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Linoleic acid metabolism	00591	%
Sma3	alpha-Linolenic acid metabolism	00592	%
Sma3	Biosynthesis of plant hormones	01070	%
Sma3	Metabolic pathways	01100	%

Source	Gene names
Sma3	At1g17420; At1g67560; At1g72520; AtLOX6; F12B7.11; F28G4.10; GSVIVT00008869001; GSVIVT00024676001; GSVIVT00024679001; GSVIVT00034068001; GSVIVT00035067001; LOC_Os03g08220; LOX10; LOX11; LOX4; LOX9; Lox3; OSIGBa0152K17.1; OSJNBa0050H14.14; OSJNBb0076N15.1;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	lipoxygenase activity	GO:0016165	Molecular Function	-
Sma3	oxylipin biosynthetic process	GO:0031408	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ketose-bisphosphate aldolase, class-II	IPR000771	-	-
Sma3	Lipoxygenase	IPR000907	-	-
Sma3	Lipoxygenase, LH2	IPR001024	-	-
Sma3	Lipoxygenase, plant	IPR001246	-	-
Sma3	Lipoxygenase, C-terminal	IPR013819	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G72520.1	LOX4 PLAT/LH2 domain-containing lipoxygenase family protein chr1:27308611-27312589 FORWARD LENGTH=926	51%
RefSeq	Arabidopsis thaliana	NP_177396.1	lipoxygenase 4 [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002311724.1	predicted protein [Populus trichocarpa]	46%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PT31

Fln msg: Distance to subject end: 633 aas, your sequence is shorter than subject: 267 - 924

Fln protein: SGHRMLTRSTAREFCFPTKAPGRQSSCWNDGSCRRRIGPICAVISDKPATTTAVTPSVDKGAMINVKAVATIRKKLKECMKDKIENQWVSLLDVIGQNVLLELVSVDIDPETTSGKRSKESALKGWLLQTAREDNIMECTANFTVSADFGWPGAILVTNHHDKEIFLESIVVEGFDSEPIYFPCHSWVHSKKDNPEKRIFFSNQPYLPDKRGDGKGERRQKDLTDKRGDGKGERKQWDRIYDYATYNDLGNADKSEDLARPILGDVI

Protein Length: 268

Fln nts: CAGTGGACACCGGATGCTCACACGAAGCACGGCGCGCGAGTTTTGCTTCCCGACAAAAGCTCCGGGCAGGCAATCGAGCTGCTGGAACGATGGTAGTTGTAGAAGGAGAATCGGTCCAATTTGTGCTGTTATCAGTGATAAACCCGCGACGACGACCGCCGTGACGCCTTCTGTTGACAAGGGTGCGATGATCAATGTGAAGGCCGTGGCCACAATCAGAAAGAAACTCAAGGAGTGTATGAAGGACAAGATCGAGAATCAATGGGTGTCTCTGTTAGATGTCATTGGCCAGAACGTCCTTCTGGAACTAGTCAGTGTTGACATCGATCCAGAGACAACTAGTGGCAAGAGAAGCAAAGAATCTGCTTTGAAGGGCTGGCTGCTGCAGACTGCCCGTGAAGATAACATAATGGAATGCACTGCAAATTTTACAGTAAGCGCTGACTTTGGTTGGCCGGGAGCTATTTTAGTTACCAATCATCACGACAAAGAAATCTTTTTAGAATCCATTGTAGTGGAAGGGTTCGACAGCGAGCCGATCTACTTCCCCTGCCACTCTTGGGTTCATTCAAAGAAGGATAATCCCGAGAAAAGAATCTTCTTCAGCAATCAGCCGTATTTGCCAGACAAGCGTGGGGATGGCAAAGGTGAACGTCGGCAGAAGGACCTGACAGACAAGCGTGGGGATGGCAAAGGTGAACGTAAGCAGTGGGATAGAATTTATGACTATGCGACTTACAATGATTTAGGGAACGCTGATAAAAGTGAGGATCTTGCAAGACCGATTCTTGGTGACGTGATAA

Fln Alignment:

AllPine_a_rep_c72989___SGHRMLTRSTAREFCFPTKAPGRQSSCWNDGSCRRRIGPICAVISDKPATTTAVTPSVDKGAMINVKAVATIRKKLKECMKDKIENQWVSLLDVIGQNVLLELVSVDIDPETTSGKRSKESALKGWLLQTAREDNIMECTANFTVSADFGWPGAILVTNHHDKEIFLESIVVEGFDSEPIYFPCHSWVHSKKDNPEKRIFFSNQPYLPDKRGDGKGERRQKDLTDKRGDGKGERKQWDRIYDYATYNDLGNADKSEDLARPILGD
C0PT31________________SGQRMLRRSTAREFCFTRKFPGRQSGCWNDGNCRRRIGLIRAVISDKPATTTAVTPSVDKGAMINVKAVAIFRKRLKEDMKDKIENQWVSLLDVIGQNVLLELVSVDIDPETSCGKRSKESALKGWLLQAAREDNMMECTANFIVSTDFGSPGAILVTNQHDKEIFLESIFVEGFGSEPIYFPCHSWVHAKKYNPEKRIFFSNQTYLPSKTPDGLEDLRQKDLKDKRGDGKGERKHWDRIFDYATYNDLGNADKSEDFARPILGD

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
422	16			83	0.994512
615	50	50			1.0
616	50	50			1.0
617	50		50		1.0
618			50	50	1.0
620		50		50	1.0
621		50		50	1.0
624	50	50			1.0
630	33	66			0.997453
633	33		66		0.997454
636		33		66	0.997456
637		33	66		0.997458
638		33	66		0.997458
645		66	33		0.997464
646	66	33			0.997467
647	66			33	0.997476
650	33		66		0.997476
651			33	66	0.997476
654	66			33	0.997476
656			66	33	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain