SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene127504

Length: 1204 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene127504

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	phosphoenolpyruvate carboxylase [Ricinus communis]	-	-	0.0	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Sma3	Putative phosphoenolpyruvate carboxylase	-	-	2.29505e-41	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphoenolpyruvate carboxylase.	EC:4.1.1.31	-	6.86e-38	-

Source	KEGGs	Term	e value	Identity
Sma3	Pyruvate metabolism	00620	6.86e-38	%
Sma3	Methane metabolism	00680	6.86e-38	%
Sma3	Carbon fixation in photosynthetic organisms	00710	6.86e-38	%
Sma3	Carbon fixation pathways in prokaryotes	00720	6.86e-38	%
Sma3	Metabolic pathways	01100	6.86e-38	%

Source	Gene names
Sma3	At1g68750; At2g42600; B1131G08.12; F14K14.14; F14N22.13; F24J5.1; GSVIVT00018735001; GSVIVT00027811001; GSVIVT00030262001; GmPEPC15; GmPEPC7; LjPEPC1; LjPEPC2; MICPUN_104763; Nsppc1; Nsppc2; OJ1134_F06.2-1; OJ1134_F06.2-2; OJ1484_G09.129-1; OSJNBa0016I09.

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	phosphoenolpyruvate carboxylase activity	GO:0008964	Molecular Function	-
Sma3	tricarboxylic acid cycle	GO:0006099	Biological Process	-
Sma3	carbon fixation	GO:0015977	Biological Process	-
Sma3	photosynthesis	GO:0015979	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR001449	-	-
Sma3	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	-
Sma3	Phosphoenolpyruvate carboxylase, active site	IPR018129	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002302820.1	predicted protein [Populus trichocarpa]	7.0e-20	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQ37

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 448 aas, your sequence is shorter than subject: 367 - 1073

Fln protein: LTCTPIRFGSWMGGDRDGNPNVTAKVTRDVCFLARWMAADLYIREIDSLRFELSMNKCSDELAKFAYEILEAENRYEERHQENGFHQASHRANAKHSVCNSPALPTQLPAGADMPACTECNDGESQLPILEFPVTDHSDSFESGHNAESSVTLLKSSLSRNSEKYEDGKLDVNVKTINVSTNASSTGSGTGTPSASSTAGFGFSSPRKKASEFNVGKSIFDKILKSSITQRPDFAPYRIVLGDVREKLITTPRRIEEILEGIPCDYDPNQYYENSAQLLETLMLCYESMYF*SSLFGVSICFSCRGEMCITNLVRFLQQSCGSDILVDGRLADLIRRVSTFGMILMKLDLRQLFIISMVQMFNFII*

Protein Length: 368

Fln nts: TTTGACATGCACTCCTATCAGATTTGGTTCCTGGATGGGAGGTGATAGAGATGGCAATCCAAATGTAACTGCTAAGGTTACCAGGGATGTTTGCTTCTTAGCGCGTTGGATGGCAGCAGATCTCTATATTCGAGAAATTGATAGTCTTCGTTTTGAACTTTCAATGAACAAATGCAGTGATGAGTTGGCAAAATTCGCATATGAAATATTAGAAGCAGAAAATCGATATGAGGAGCGGCATCAGGAAAATGGGTTTCATCAGGCTAGTCATAGGGCAAATGCAAAGCATTCAGTCTGCAATAGTCCAGCCTTACCGACCCAACTTCCAGCTGGTGCAGATATGCCTGCATGTACAGAATGCAATGATGGAGAATCCCAACTACCCATCTTAGAGTTCCCAGTGACAGATCACAGTGATTCCTTTGAGTCTGGTCACAATGCTGAGAGCTCAGTGACACTGTTGAAGAGTTCCCTTTCAAGAAATTCAGAGAAGTATGAAGATGGAAAGCTGGATGTAAATGTCAAAACAATTAATGTTTCTACAAATGCATCTTCAACTGGATCAGGGACTGGAACTCCTTCTGCCAGTAGTACAGCAGGTTTTGGTTTTTCCAGTCCTCGAAAGAAAGCATCAGAATTTAATGTGGGTAAATCCATCTTTGATAAAATTCTTAAATCCAGCATTACACAGCGCCCAGATTTTGCTCCTTATAGAATTGTCCTTGGAGACGTAAGGGAAAAGCTTATCACTACACCTAGGCGGATTGAAGAGATCTTGGAGGGCATTCCCTGTGATTATGACCCTAATCAGTACTATGAAAATTCAGCACAACTTTTAGAAACTCTGATGCTTTGCTATGAATCAATGTATTTCTGAAGTTCTTTGTTTGGAGTGAGCATCTGCTTTTCCTGCCGGGGTGAAATGTGCATCACTAATTTAGTTCGTTTTCTGCAGCAATCCTGTGGGTCAGATATCCTAGTTGATGGACGCCTGGCTGACCTTATTCGGCGGGTTTCAACATTCGGAATGATATTGATGAAACTTGATCTGCGCCAGTTATTTATCATAAGTATGGTTCAAATGTTCAACTTTATAATTTGAACAGTCGACTGGCAGATTTATCAAATTTGGTGGATCAGGAATCTGGCAAACATTAAGAAACTTTAGATGCCATTACGGAGTATTTAGACGTGGGTACCCATA

Fln Alignment:

AllPine_a_rep_c71782___LTCTPIRFGSWMGGDRDGNPNVTAKVTRDVCFLARWMAADLYIREIDSLRFELSMNKCSDELAKFAYEILEAENRYEERHQENGFHQASHRANAKHSVCNSPALPTQLPAGADMPACTECNDGESQLPILEFPVTDHSDSFESGHNAESSVTLLKSSLSRNSEKYEDGKLDVNVKTINVXXXXXXXXXXXXXXXXXXXXXXXXXXXRKKASEFNVGKSIFDKILKSSITQRPDFAPYRIVLGDVREKLITTPRRIEEILEGIPCDYDPNQYYENSAQLLETLMLCYESMYF*SSLFGVSICFSCRGEMCITNLVRFLQQSCGSDILVDGRLADLIRRVSTFGMILMKLDLRQ
C0PQ37________________LTCTPIRFGSWMGGDRDGNPKVTAKVTRDVCFLARWMAADLYIREIDSLRFELSMNRCNDELAKFAYEILEAENQYEERHQESGFHQTSHRVHAKHSVSHSPALPTQLPAGADMPACTECNDGESQLPILEFPVTDHSDSFESGHNAESSVTLLKSSPSRTSEKYEDGKLDVDVRTINISTNASSTGTGTGIASASSTAGFGFSSPRKKTSEFNVGKSSFDKIINPSIPQRPDIAPYRIVLGHVREKLISTRRRIEEILEGIPWDYDPSQYYEKSAQLLEPLMLCYESM-----------------------------QSCGSEILADGRLADLIRRVSTFGMILMKLDLRQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain