SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene127480

Length: 1228 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene127480

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative heavy-metal transporter [Arabidopsis thaliana] gb\|AAR10767.1\| potential Zn/Cd heavy metal transporter [Arabidopsis thaliana]	-	-	0.0	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	31%
Sma3	Putative cadmium/zinc-transporting ATPase 3	-	-	5.714e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Cadmium-exporting ATPase.	EC:3.6.3.3	-	1.133e-13	-
Sma3	Zinc-exporting ATPase.	EC:3.6.3.5	-	1.133e-13	-

Source	Gene names
Sma3	ATPase2; ATPase5-1B; AhHMA4-1; AhHMA4-2; AhHMA4-3; At2g19110; At4g30110; At4g30120; F6G3.140; F6G3.150; GSVIVT00001529001; HMA2; HMA3; HMA4; MICPUCDRAFT_50631; MICPUN_94613; OSJNBa0061L20.105; OSTLU_1206; Os07g0232900; OsI_23478; OsI_24354; OsI_25443; OsJ

Source	GOs	Term	Type	Identity
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	copper-exporting ATPase activity	GO:0004008	Molecular Function	-
Sma3	cation channel activity	GO:0005261	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	cadmium-exporting ATPase activity	GO:0008551	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	GO:0015662	Molecular Function	-
Sma3	zinc-exporting ATPase activity	GO:0016463	Molecular Function	-
Sma3	cadmium ion binding	GO:0046870	Molecular Function	-
Sma3	metal ion binding	GO:0046872	Molecular Function	-
Sma3	metal ion transmembrane transporter activity	GO:0046873	Molecular Function	-
Sma3	ATP biosynthetic process	GO:0006754	Biological Process	-
Sma3	copper ion transport	GO:0006825	Biological Process	-
Sma3	zinc ion transport	GO:0006829	Biological Process	-
Sma3	cadmium ion transport	GO:0015691	Biological Process	-
Sma3	metal ion transport	GO:0030001	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cof protein	IPR000150	-	-
Sma3	ATPase, P-type, H+ transporting proton pump	IPR000695	-	-
Sma3	ATPase, P-type, cadmium-transporting	IPR001366	-	-
Sma3		IPR001756	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	Heavy metal-associated domain, HMA	IPR006121	-	-
Sma3	ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating	IPR006404	-	-
Sma3	ATPase, P-type, heavy metal translocating	IPR006416	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	Heavy-metal-associated, conserved site	IPR017969	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G30110.1	HMA2, ATHMA2 heavy metal atpase 2 chr4:14720253-14724577 REVERSE LENGTH=951	0.0	50%
RefSeq	Arabidopsis thaliana	NP_194740.1	Cd2+/Zn2+-exporting ATPase [Arabidopsis thaliana]	0.0	50%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ20

Fln msg: STOP codon was not found. Distance to subject end: 8 aas, your sequence is shorter than subject: 409 - 998

Fln protein: ARYYTPVIVVAALAMVLAPCIDRSLGFRNWAYKALVLVVTACPCALVISTPVATACGLAHAARVGLLIKGGKYLETLGKLKVVAFDKTGTLTEGIFRVVDVMFVESETINVQKWLSWIASLESRSSHPMSVAIVSHCRQQGLEPSAEVKNFTILEGEGICGEVDNQKIYIGNSRLSNRLGWTKYVPEDWDIRGATVGYVGTEENFVGAFSVADNCRSEGAAALDRLKKLGIRLAMLTGDTASSAALIEEEVGEIQVHSQLLPEDKVRIIGELKQVGKTAMIGDGINDAPALAAADIGIAMGVAGSAVAMETSDIALMSNDIRKIAAAVKIGRRTLRKIYINVAISVVTKAVIFALAAVGMVYLWIAVLADVGTGMLVTLNSMLLLKGEKRHSHGGHRNRHRHGVCNQEN

Protein Length: 410

Fln nts: TGCAAGATATTATACTCCAGTTATTGTGGTGGCAGCTCTAGCAATGGTATTAGCCCCTTGCATTGATCGCTCGCTTGGATTTCGCAACTGGGCTTATAAAGCCTTAGTTCTTGTGGTAACCGCTTGCCCATGCGCCTTGGTAATCTCAACACCAGTGGCCACGGCGTGTGGGTTGGCCCATGCTGCTAGAGTAGGGCTCCTTATCAAAGGTGGGAAGTATCTGGAAACCTTAGGGAAACTTAAGGTGGTAGCGTTTGATAAAACTGGAACACTCACGGAAGGAATATTCAGGGTGGTAGATGTAATGTTTGTTGAGTCTGAGACCATCAATGTGCAGAAATGGTTATCATGGATAGCAAGCCTTGAGAGTAGATCAAGTCATCCCATGTCAGTTGCAATTGTCTCACACTGCCGACAGCAAGGCCTAGAGCCATCAGCTGAGGTAAAGAATTTTACCATCCTGGAAGGAGAAGGCATATGTGGAGAGGTGGACAATCAGAAAATTTACATCGGAAATTCTCGGTTATCAAATCGATTAGGTTGGACCAAATATGTACCAGAAGACTGGGACATCCGAGGAGCAACAGTCGGATATGTTGGAACAGAGGAAAATTTTGTAGGGGCCTTCAGTGTGGCTGATAATTGCCGATCAGAAGGGGCAGCAGCTCTTGATAGACTCAAGAAACTAGGAATTCGACTAGCTATGCTCACTGGGGATACAGCCAGCTCAGCTGCTCTCATTGAAGAAGAGGTTGGGGAGATTCAAGTTCATTCCCAACTACTCCCAGAGGACAAGGTCCGAATTATCGGAGAGTTAAAGCAGGTGGGCAAGACAGCCATGATAGGCGATGGAATCAACGATGCACCAGCATTAGCCGCAGCAGACATAGGAATAGCCATGGGCGTAGCAGGTTCGGCTGTGGCCATGGAGACTTCAGACATAGCCCTCATGTCTAATGATATCAGGAAAATAGCAGCAGCAGTGAAAATTGGCCGAAGGACATTGCGGAAAATATACATAAACGTTGCCATCTCCGTTGTCACAAAGGCTGTTATTTTTGCCCTCGCTGCAGTGGGGATGGTATACCTCTGGATAGCAGTGCTGGCAGACGTGGGGACTGGTATGCTTGTAACGTTGAACAGCATGCTTCTCTTGAAAGGAGAAAAACGTCATAGCCATGGTGGCCATCGCAATCGCCATCGCCATGGCGTTTGCAATCAAGAAAAT

Fln Alignment:

AllPine_a_rep_c71599___ALVLVVTACPCALVISTPVATACGLAHAARVGLLIKGGKYLETLGKLKVVAFDKTGTLTEGIFRVVDVMFVESETINVQKWLSWIASLESRSSHPMSVAIVSHC-------------RQQGLEPS-----AEVKNFTILEGEGICGEVDNQKIYIGNSRLSNRLGWTKYVP-------EDWDIRGATVGYVGTEENFVGAFSVADNCRSEGAAALDRLKKLGIRLAMLTGDTASSAALIEEEVGEIQVHSQLLPEDKVRIIGELKQVG-KTAMIGXXXXXXXXXXXXXXXXXXXVAGSAVAMETSDIALMSNDIRKIAAAVKIGRRTLRKIYINVAISVVTKAVIFALAAVGMVY--------LWIAVLADVGTGMLVTLNSMLL
B8LQ20________________AISVLVIACPCALGLATPTAVMVATGIGATHGVLIKGGDALERAQKIQCVVFDKTGTLTKGKPSVTSAKVLSD--MQRGEFLRIVASAEASSEHPLARAVVDYAYHFHFFGEPPKDMDMQGLRTKNTAWLLTASKFEALPGKGVRCSIEGTEILVGNRKLMSEDG--VFIPSVAEEYLKDMEQHARTGILVAFDKELVGMLAISDPLKREAAVVIEGLKKMGILPIMVTGDNWTTARAVAQELGIEDVKAEVIPAGKAEVIRSLQKDGTMVAMVGDGINDSPALAAADVGMAIG-AGTDIAIEAADYVLMRNNLEDVITAIDLSKKTFARIRLNYVFAMGYNIFAIPLAA-GLFFPFLKISLPPWVSGAAMALSSVSVVCSSLLL

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
759		33	66		0.997452
1040		87		12	0.992554
1173	80		20		0.995493
1198	75	25			0.996473
1201		75	25		0.996473
1204		75	25		0.996473
1205	75			25	0.996473
1207		75		25	0.996473
1210	25	75			0.996473
1213		25	75		0.996473
1214	25		75		0.996473
1215	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain