SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene127447

Length: 1317 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene127447 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tubulin alpha-2/alpha-4 chain n=384 Tax=Eukaryota RepID=TBA2_ARATH	-	-	0.0	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Sma3	Alpha-tubulin	-	-	7.18e-31	-

Source	Gene names
Sma3	AT1; AT4G14960; ATUB3; ATub4; At1g04820; At1g64740; At4g14960; BYtuba; F13O11.5; GSVIVT00010650001; GSVIVT00015032001; GSVIVT00020930001; GSVIVT00024805001; GSVIVT00038615001; LOC_Os03g11970; LOC_Os03g51600; MtrDRAFT_AC170580g1v1; OSJNBa0013A09.14; OSJNBb

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	nucleomorph	GO:0033009	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	protein polymerization	GO:0051258	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Tubulin	IPR000217	-	-
Sma3	Alpha tubulin	IPR002452	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G50010.1	TUA2 tubulin alpha-2 chain chr1:18517737-18519729 FORWARD LENGTH=450	94%
RefSeq	Arabidopsis thaliana	NP_175423.1	tubulin alpha-2/alpha-4 chain [Arabidopsis thaliana]	94%
RefSeq	Populus trichocarpa	XP_002313194.1	tubulin alpha-5 chain [Populus trichocarpa]	95%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C0PRI6

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 33 aas, putative chimeric sequence, your sequence is shorter than subject: 286 - 319

Fln protein: MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSTFPTRPVLQRCSRESIISSISCMPSEHLFIGMWARVRKRASFLKRVRILLPSRRTMRRLALSLQRERKG*

Protein Length: 287

Fln nts: GGGTGGGTGGACGGGGAGGCTTTAAAGGGCATCGGCAGGGTTAAAGGAGGATGGCGAGCTGAGCTCTTCGAATACAGCAGTAACAGGCGTGGTGGTATTGCAGGAGGCGTCTTTGCAAACGCCTTCTTCATCCGATTTCCTACGTTCGCCGTTTCTTCGCAGTTTTTCTCTTTTTTTAGGGTTTTTCCTTCGTCACCAGCGAAA_-_ATGAGAGAGTGCATCTCGATCCACATTGGACAGGCCGGTATCCAGGTTGGAAATGCTTGCTGGGAACTTTACTGCCTCGAGCACGGCATTCAGCCTGATGGCCAGATGCCCAGCGACAAAACTGTCGGTGGTGGAGACGATGCATTCAACACTTTCTTCAGCGAAACTGGAGCCGGAAAGCATGTTCCCCGCGCTGTCTTTGTAGATCTGGAGCCGACTGTCATTGACGAGGTACGGACTGGTACTTACCGTCAGCTTTTCCATCCTGAACAGCTTATCAGCGGCAAGGAAGATGCGGCCAACAACTTTGCCCGTGGTCATTACACCATTGGCAAGGAAATTGTGGACCTCTGCCTGGACCGTATTCGGAAGCTGGCTGACAACTGCACGGGTCTTCAAGGATTCCTCGTCTTCAACGCAGTTGGTGGAGGAACTGGTTCTGGTCTTGGTTCTCTTCTACTGGAACGTCTTTCAGTGGACTACGGCAAAAAATCCAAACTTGGATTCACTGTGTATCCATCACCACAGGTCTCAACTTCGGTCGTTGAGCCGTACAACAGCGTTCTCTCCACGCATTCTCTTCTGGAACACACCGATGTGGCCGTTCTCCTCGATAATGAAGCTATTTACGATATTTGCCGTCGTTCTACATTTCCAACTCGACCAGTGTTGCAGAGGTGTTCTCGAGAATCGATCATAAGTTCGATCTCATGTATGCCAAGCGAGCATTTGTTCATTGGTATGTGGGCGAGGGTACGGAAGAGGGCGAGTTTTCTGAAGCGCGTGAGGATCTTGCTGCCCTCGAGAAGGACTATGAGGAGGTTGGCGCTGAGTCTGCAGAGGGAGAGGAAGGGATGA___AGGGATAAGCGAAGTGTTCACCCCTTCAGATAGCAATGCTGATTGTTGGTACACGAGGTGATGTACAACCATTCGTAGCCATTGGTAAACATTTGCAGGAGTATGGGCACCGTGTGAGATTAGCAACTCATTCAAATTTTGAGGAATTTGTATTGACGGCTGGTCTTGAGTTCTATCCACTTGGGGGAGATCCAAAAGTTCTTGCTGAATACATGGTTAAGAACAAAGGGTTTTTGCCATCTGGGCCATCAGAGA

Fln Alignment:

AllPine_a_rep_c71164___MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSTFPTRPVLQRCSR
C0PRI6________________MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNR

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
595			25	75	0.996473
636	16			83	0.994512
725		92	8		0.999718
1095	16	83			0.994512
1096	16	83			0.994512
1111		16	83		0.994512
1149	66		33		0.997452
1153	33		66		0.999889
1158		66	33		0.997452
1286		43	43		1.0
1287		56		43	1.0
1289	60		40		1.0
1319	66	33			0.997452
1320	66	33			0.997452
1321		33	66		0.997452
1323	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain