SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene127440

Length: 1092 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene127440 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribulose bisphosphate carboxylase small chain, chloroplastic n=1 Tax=Pinus thunbergii RepID=RBS_PINTH	-	-	0.0	98%
FL-Next	sp=Ribulose bisphosphate carboxylase small chain, chloroplastic; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana).	-	-	0.0	98%

Source	ECs	Term	Type	e value	Identity
Sma3	Ribulose-bisphosphate carboxylase.	EC:4.1.1.39	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Glyoxylate and dicarboxylate metabolism	00630	%
Sma3	Carbon fixation in photosynthetic organisms	00710	%
Sma3	Metabolic pathways	01100	%

Source	GOs	Term	Type	Identity
Sma3	chloroplast ribulose bisphosphate carboxylase complex	GO:0009573	Cellular Component	-
Sma3	ribulose-bisphosphate carboxylase activity	GO:0016984	Molecular Function	-
Sma3	carbon fixation	GO:0015977	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribulose bisphosphate carboxylase small chain, domain	IPR000894	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G67090.1	RBCS1A ribulose bisphosphate carboxylase small chain 1A chr1:25048465-25049249 REVERSE LENGTH=180	65%
RefSeq	Arabidopsis thaliana	NP_176880.1	ribulose bisphosphate carboxylase small chain 1A [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002329284.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
381	4		95		0.995482
602			18	81	0.999994
611	90	10			0.90298
613	90	10			0.90298
615	10		90		0.90298
640	11		88		0.991528
701	10	90			0.90298
704		90		10	0.90298
705	90			10	0.90298
870		11		88	0.991528
871		11		88	0.991528
872		12	87		0.992554
874			87	12	0.992554
950			16	83	0.994523
951	16	66			0.988816
952		83		16	0.994523
953	16	83			0.994523
954		83	16		0.994523
956	16			83	0.994523

SSRs (tot: 1)

Start position	End position	Sequence	Length
830	842	TGC TGC TGC TGC T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain