SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene127325

Length: 1791 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene127325 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TIR1/AFB auxin receptor protein PintaAFB4A n=2 Tax=Pinus taeda RepID=C9EHS9_PINTA	-	-	0.0	73%
FL-Next	tr=TIR1/AFB auxin receptor protein PintaAFB4A; Pinus taeda (Loblolly pine).	-	-	0.0	73%
Sma3	TIR1-like protein	-	-	7.744e-20	-

Source	Gene names
Sma3	AFB1; AFB2; AFB3; At1g12820; At3g26810; At3g62980; At4g03190; At4g24390; At5g49980; F13K23.7; F4C21.11; FBL1; FBL18; FBL2; FBL3; FBL4; FBL5; FBL6; FBL7; FBL8; FBX14; GER1; GRH1; GSVIVT00006948001; GSVIVT00009745001; GSVIVT00015144001; GSVIVT00023591001; G

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	SCF ubiquitin ligase complex	GO:0019005	Cellular Component	-
Sma3	nuclear SCF ubiquitin ligase complex	GO:0043224	Cellular Component	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	auxin binding	GO:0010011	Molecular Function	-
Sma3	response to molecule of bacterial origin	GO:0002237	Biological Process	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	cell cycle	GO:0007049	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	pollen maturation	GO:0010152	Biological Process	-
Sma3	lateral root formation	GO:0010311	Biological Process	-
Sma3	cellular response to phosphate starvation	GO:0016036	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-
Sma3	negative regulation of transcription by glucose	GO:0045014	Biological Process	-
Sma3	stamen development	GO:0048443	Biological Process	-
Sma3	developmental growth	GO:0048589	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Leucine-rich repeat 2	IPR013101	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G49980.1	AFB5 auxin F-box protein 5 chr5:20334420-20336531 REVERSE LENGTH=619	59%
RefSeq	Arabidopsis thaliana	NP_568718.1	transport inhibitor response 1-like protein [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002306554.1	f-box family protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C9EHS9

Fln msg: your sequence is shorter than subject: 441 - 585

Fln protein: NFKDLVLLYCDGFSTKGLGIIASKCRQLRRLDLNEDDIVDSGVDWLSCFPETTTTLECLSFECLEGPINIDALERLVARCLSLKELRLNRTISVVQLHRLMLRAPQLTHLGTGCFSYDFIPEQATVLQVAFNNCKSLQCLSGFREVVPEYLPTIYSVCNNLLELNLSYAVMGSRELEQIVCNCPKLQRLWV*DSVQDAGLRAAAATCKDLRDLRVFPMDAREDGNGCVSDEGLVAISEGCPNLQSILYFCQRMTNAAVVTMSKNCQNLTSFRLCIMGRHKPDHITHKPMDEGFGAIVMNCKNVTRLGLYAHLTNKAFEYIGTYGESLETLSVAFAGDNDLGMKYVLDGCRRLQKLEIRDSPFGDTALLSGLHHYEQMRFLWMSDCKVSIQGCMELARKMPWMSVEIIRENSYDDCLVEKLYVYRSVAGPRKDMPPIVITL*

Protein Length: 442

Fln nts: CCAACTTTAAGGACTTAGTACTGCTTTACTGTGATGGATTCAGCACCAAGGGCCTTGGTATAATTGCAAGCAAGTGCAGACAATTAAGACGACTTGATCTGAATGAAGATGATATTGTCGATAGTGGAGTTGATTGGTTGAGCTGCTTTCCAGAAACAACTACCACTTTAGAATGCCTTAGTTTTGAATGTTTGGAGGGCCCGATAAATATTGATGCACTTGAAAGATTGGTGGCACGTTGCTTGTCTCTAAAAGAACTAAGGCTGAATAGGACTATCTCGGTAGTACAGCTGCATCGACTTATGTTGAGAGCCCCACAACTTACACATTTAGGAACAGGCTGTTTCTCCTATGATTTTATACCGGAGCAAGCAACAGTTCTTCAGGTTGCCTTCAACAATTGCAAGTCACTTCAGTGTTTGTCAGGATTTCGGGAAGTTGTTCCTGAGTATCTGCCAACAATCTATTCTGTTTGCAATAACTTACTGGAGCTGAACTTGAGCTATGCTGTTATGGGTAGCAGGGAGTTGGAGCAGATTGTCTGCAATTGTCCAAAATTGCAGCGTCTTTGGGTTTGAGACTCAGTGCAAGATGCAGGTCTACGGGCTGCTGCTGCAACCTGTAAGGACTTGAGGGATCTCCGAGTGTTTCCCATGGATGCAAGAGAGGATGGGAATGGTTGTGTATCTGATGAGGGTCTGGTTGCCATTTCAGAAGGATGTCCAAATCTCCAGTCAATACTTTACTTTTGTCAGCGTATGACAAATGCAGCAGTTGTGACCATGTCAAAAAACTGTCAGAACCTTACCAGCTTTCGACTCTGTATCATGGGTCGGCACAAACCTGATCATATTACTCATAAACCAATGGATGAAGGATTCGGTGCCATTGTAATGAACTGCAAAAATGTCACAAGGCTGGGATTATATGCCCATCTGACCAATAAAGCATTTGAATACATTGGGACGTATGGAGAATCATTAGAGACCTTATCAGTGGCATTTGCTGGGGATAATGATTTAGGCATGAAGTATGTTCTTGATGGATGCAGACGTCTACAGAAGCTTGAAATAAGGGACAGCCCTTTTGGAGATACTGCCCTTTTGTCTGGTTTACATCATTATGAGCAAATGCGATTTTTATGGATGTCTGATTGCAAGGTCAGTATACAGGGTTGCATGGAGCTAGCAAGAAAAATGCCATGGATGAGTGTGGAGATAATCAGAGAAAATAGCTACGATGACTGCCTTGTGGAAAAACTTTATGTATATCGTTCTGTAGCAGGGCCTCGTAAAGACATGCCACCAATCGTAATTACTCTGTAG___CCATTTCTTGTCCAATTTTGTGGCAATGGCCATGTACTATTTGGGTGAATCTGTAAGCAACCGTGCTTTCAATTCTTCATGTCCAGTGGTTGTAGGGGTCGAGTCCTTGTACATATTTCTTTTACAAGTGCAGTGGAGTAGGAGGTCAAATTGGCAATATTCTTTGGCATTTCCTTCAGGGTGATGCTGAAAGGTGGAGGACGACCAATGAATGCTCTATGCACACGCATTGGGCACTATTTTAGGGTCCCCAACTGACATGATTTTAAATTGAAGTTATTGTTAAGTAATGACTCTTTTAATGAGTCCTTTTGCCATGTCACTTCAATAAGCTTTTGAAGTGAATTCTACATGGATAATTTTAGTTGTTTTTATTAAGGTTTGACTTACACTTACTATTTCAAGTTACAATAATATTGTCAATCTAGTATCTAGTAATTTATATTTCTACAGCATTCCAACTTCT

Fln Alignment:

AllPine_a_rep_c70130___FKDLVLLYCDGFSTKGLGIIASKCRQLRRLDLNEDDIVDSGVDWLSCFPETTTTLECLSFECLEGPINIDALERLVARCLSLKELRLNRTISVVQLHRLMLRAPQLTHLGTGCFSYDFIPEQATVLQVAFNNCKSLQCLSGFREVVPEYLPTIYSVCNNLLELNLSYAVMGSRELEQIVCNCPKLQRLWV*DSVQDAGLRAAAATCKDLRDLRVFPMDAREDGNGCVSDEGLVAISEGCPNLQSILYFCQRMTNAAVVTMSKNCQNLTSFRLCIMGRHKPDHITHKPMDEGFGAIVMNCKNVTRLGLYAHLTNKAFEYIGTYGESLETLSVAFAGDNDLGMKYVLDGCRRLQKLEIRDSPFGDTALLSGLHHYEQMRFLWMSDCKVSIQGCMELARKMPWMSVEIIRENSYDDCLVEKLYVYRSVAGPRKDMPPIVITL
C9EHS9________________FKELVMVCCDGFSTGGLASIASKCRQLTTLDLNEDEIHDNGEDWLACFPETLTSLRSLCFDCLEGPVNFDALERLVARCPSLKKLRLNRNVSIVQLQRLIIKAPQLTHLGTGSFFYEFQLEQVADLLAAFSNCKQLQCLSGFREVVPEYIPAVYPVCSNLTSLNFSYAVIGSRELEGIVCHCRKLQLLWVLDSVGDKGLEAAATTCKDLRDLRVFPVDAREDGEGCVSERGLVAISEGCPNLESILYFCQRMTNKAVVTMSHNCSKLASFRLCIMGRHQPDHLTGEPMDEGFGAIVRNCKSLTRLAVSGLLTDKAFQYFGAYGERLETLSVAFAGESDLSMKYVLDGCKNLRKLEIRDSPFGDVALLSGLHHYENMRFLWMSDCRLTLQGCTELAKKMPGLNVEIIRENECNDSLVEKLYAYRTVAGPRKDMPSFVTIL

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
233		25		75	0.996473
412	25		75		0.996473
1383		33		66	0.997452
1637	87		12		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain