SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene127317

Length: 958 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene127317

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pyruvate decarboxylase 1 n=1 Tax=Lotus corniculatus RepID=Q84V95_LOTCO	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Sma3	Pyruvate decarboxylase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Pyruvate decarboxylase.	EC:4.1.1.1	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Glycolysis / Gluconeogenesis	00010	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	AT4g33070; At4g33070; At5g01320; At5g01330; At5g54960; CHLREDRAFT_127786; GSVIVT00001355001; GSVIVT00003899001; GSVIVT00024065001; GSVIVT00027362001; GSVIVT00035905001; GSVIVT00035906001; GSVIVT00036421001; OSJNBa0052E20.3; Os01g0160100; Os05g0469800; OsI

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	pyruvate decarboxylase activity	GO:0004737	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	carboxy-lyase activity	GO:0016831	Molecular Function	-
Sma3	thiamine pyrophosphate binding	GO:0030976	Molecular Function	-
Sma3	trehalose biosynthetic process	GO:0005992	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	TPP-binding enzyme, conserved site	IPR000399	-	-
Sma3	Glycosyl transferase, family 20	IPR001830	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Thiamine pyrophosphate enzyme, C-terminal TPP-binding	IPR011766	-	-
Sma3	Thiamine pyrophosphate enzyme, central domain	IPR012000	-	-
Sma3	Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain	IPR012001	-	-
Sma3	Pyruvate decarboxylase/indolepyruvate decarboxylase	IPR012110	-	-
Sma3	Gonadotropin, beta subunit, conserved site	IPR018245	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G01320.1	Thiamine pyrophosphate dependent pyruvate decarboxylase family protein chr5:129484-131625 REVERSE LENGTH=603	84%
RefSeq	Arabidopsis thaliana	NP_195752.1	pyruvate decarboxylase [Arabidopsis thaliana]	84%
RefSeq	Populus trichocarpa	XP_002308230.1	predicted protein [Populus trichocarpa]	83%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRN0

Fln msg: your sequence is shorter than subject: 236 - 409

Fln protein: LQALAKKVKRNPTCLENYRRIFVPEGVPLKSAPNEPLRVNVLFKHIQGMLTNETAVIAETGDSWFNCQKLKLPEKCGYEFQMQYGSIGWSVGATLGYAQATPEKRVIACIGDGSFQVTVQDVSTMIRNGQNPIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGIVKAIHNGEGKCWTAKVKTEEEVVEAIKTSLGPKKDCLCFIEVIVHKDDTSKELLEWGSRVSSANSRPPNPQ*

Protein Length: 237

Fln nts: CTTTACAAGCCCTTGCAAAGAAAGTGAAGCGCAACCCAACATGCTTGGAAAATTACCGGCGTATTTTTGTACCTGAAGGTGTTCCCTTGAAAAGTGCACCAAATGAGCCCTTGAGGGTCAATGTGCTATTCAAACACATTCAGGGCATGCTCACAAATGAAACTGCTGTAATTGCTGAAACTGGTGACTCTTGGTTCAATTGCCAGAAGCTTAAATTGCCAGAAAAGTGTGGGTATGAGTTTCAAATGCAGTATGGATCAATTGGCTGGTCTGTAGGAGCAACACTGGGATATGCTCAAGCTACGCCAGAAAAACGTGTAATTGCATGCATTGGTGATGGAAGCTTCCAGGTCACAGTCCAGGATGTTTCTACCATGATCCGAAATGGGCAGAATCCTATCATTTTTCTGATTAATAATGGAGGATACACTATAGAGGTCGAAATTCATGATGGACCATACAATGTCATAAAGAATTGGAACTACACCGGTATAGTAAAGGCCATTCATAACGGTGAAGGGAAATGCTGGACTGCGAAGGTTAAGACAGAAGAAGAGGTTGTAGAGGCTATTAAAACTTCCCTAGGGCCCAAAAAGGATTGCTTATGTTTCATTGAAGTCATTGTACACAAAGATGATACCAGCAAAGAGTTGCTTGAGTGGGGGTCCAGGGTTTCGTCAGCAAACAGCAGGCCACCAAATCCTCAGTAG___TGGGGCTTTAACAAGAAGAGCAATTAGAAACACTTTCCGCATCTCATGTTTCAGATGTCATTGTTTTTGTGGTCATCCTCTAGGATCATATGTTATAATCATCCTATATATCTGAATCTTGATCAAAGGTTGAGCTGTGGCCCTCCATTTAGGCACACAGGATACTGCTACTTTTGTGCTTGGTTAGCATGTTTAGTGTCATACTTTGCAAGAGCAGTTGGAGCCATTTTTGCAATATGAATAACATT

Fln Alignment:

AllPine_a_rep_c70086___LQALAKKVKRNPTCLENYRRIFVPEGVPLKSAPNEPLRVNVLFKHIQGMLTNETAVIAETGDSWFNCQKLKLPEKCGYEFQMQYGSIGWSVGATLGYAQATPEKRVIACIGDGSFQVTVQDVSTMIRNGQNPIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGIVKAIHNGEGKCWXXXXXXXXXXXXXXXXSLGPKKDCLCFIEVIVHKDDTSKELLEWGSRVSSANSRPPNPQ
C0PRN0________________LEALAKKVKHNPTSLENYRRIFVPEGVPLKSAPNEPLRVNVLFKHIQGMLTNETAVIAETGDSWFNCQKLKLPEKCGYEFQMQYGSIGWSVGATLGYAQAAPDKRVIACIGDGSFQVTVQDVSTMIRNGQNTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDALHNGEGKCWTVKVKTEEEVVEAIKTSLGPKKDCLCFIEVIVHKDDTSKELLEWGSRVSAANGRPPNPQ

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
455			25	75	0.996473
570	25		75		1.0
668		33	66		0.997452
714			25	75	0.996474
723	33		66		1.0
765		50	50		1.0
813		80	20		0.995493
822		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain