SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene127298

Length: 1911 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene127298

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	24-sterol C-methyltransferase n=1 Tax=Gossypium hirsutum RepID=Q2QDF7_GOSHI	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Sma3	Putative uncharacterized protein	-	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G13710.1	SMT1, CPH sterol methyltransferase 1 chr5:4424048-4426866 REVERSE LENGTH=336	76%
RefSeq	Arabidopsis thaliana	NP_001078579.1	cycloartenol-c-24-methyltransferase [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002313315.1	predicted protein [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PRC7

Fln msg:

Fln protein: MATGGGALDLASGMGGNIEKEQMLTAVEEYEKYHMYYGGDEGSRKSNYTDMVNKYYDLATSFYEYGWGESFHFAHRWKGETLRESIKRHEHFLALQLSLKPAMKVLDVGCGIGGPLREIARFSRTSITGLNNNAYQISRGKELNRQCGLDKSCDFVKGDFMKMPFSNDTFDAVYAIEATCHAPDAVGCYKEIKRVLKPGQLFAAYEWCMTDSFDPKNEEHQKIKAEIELGDGLPDIRTTNQCIEALKSAGFEVLFEENLTVSSTVPWYDPLDTSHFSLSSFRLTAIGRFLTRNMVRMLEFLRLAPEGSERVSSFLEKAAEGLVAGGRKDIFTPMYFFLARKPLSDNQS*

Protein Length: 350

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTCATTTTCTATTCCTGTGTTGAAACAAAAATTAATTCAATGTGTTTTTCACAACACCGTGCCCATGTTATCTTTTTGTGACGTGGCATCCGAAAGCCAGATCGCACGATCAATTCCCTGGCTTTGCCACCGAAACAGACGAACCTCAATTGTTATTATATAGCTGGCTTGGTTTTATGTTTGATGGGGGGTTCATTTCCACCAGCTATGCTTGCGTTGCCACAAACCGATGTAATTTATTATTGTGCGCAGGGATTCCTTCTGCTCCTTATGATCCCCTAACCCCTAAATCGTAGCAGTGAAGCCATTAACGAATTTTGCGGGTTCAGAAAGATTCACTGAATCGCTTATTAAAACTCTGTTTCAGGA_-_ATGGCAACAGGAGGAGGAGCGTTGGATCTGGCCTCAGGAATGGGAGGCAACATTGAGAAAGAACAAATGCTGACCGCTGTTGAAGAGTACGAAAAATATCACATGTACTATGGTGGTGACGAAGGCTCGAGAAAATCTAACTATACAGACATGGTAAATAAATACTATGATCTGGCGACTAGTTTCTATGAGTATGGATGGGGGGAATCTTTTCATTTTGCTCACAGATGGAAAGGGGAGACCCTCCGAGAAAGTATAAAGCGCCATGAACATTTTCTTGCTCTTCAGCTTTCTTTAAAGCCTGCAATGAAGGTATTGGACGTTGGATGTGGGATTGGAGGTCCACTGAGAGAAATTGCTAGGTTCAGTCGGACTTCGATCACAGGATTGAATAATAATGCATATCAGATATCAAGAGGAAAAGAGCTTAACAGGCAATGTGGGCTAGACAAAAGTTGCGATTTTGTCAAGGGAGACTTCATGAAGATGCCTTTCTCCAACGATACTTTTGATGCAGTTTATGCAATTGAGGCTACCTGTCATGCACCAGATGCAGTTGGCTGCTACAAAGAGATAAAAAGAGTACTGAAACCTGGCCAACTGTTTGCGGCATATGAATGGTGCATGACTGACTCTTTTGACCCAAAGAATGAAGAACACCAGAAGATTAAGGCAGAAATTGAACTTGGAGATGGGCTTCCTGACATTCGTACTACAAACCAGTGTATTGAAGCTCTTAAATCTGCTGGATTTGAGGTGCTCTTTGAAGAGAACCTTACAGTCTCATCAACAGTTCCGTGGTATGATCCACTTGATACAAGTCATTTCTCTCTGAGTAGTTTTCGTCTCACAGCCATTGGTCGCTTTTTGACAAGAAATATGGTTAGAATGTTGGAATTCCTGAGGTTAGCACCAGAAGGCAGTGAAAGGGTATCCTCATTTTTGGAGAAAGCTGCAGAAGGGCTCGTTGCAGGGGGAAGGAAAGATATTTTTACACCTATGTACTTTTTTCTGGCCCGAAAACCTTTGAGCGATAACCAGTCGTAA___GGTTGACCGCATTTTTCACGAGAACAGAGACTACACCGCTTTTGTTTACAGACAGCTGAACAATTAGTTTCTTGTTTTTAAGGCATTTATTTTTTCTTGCTTCATTGTTTGGCTTTTCAACGGGGAAAGGAAATATAAACAGAAGATTGTAAAAATCATATTCCAGACGATTCCAGACAATGTATATGGAATCTCCTTTGTTACTTGGGTTTTTATCAATCTAAATTACTGTTTCCAGTACCTAAAATCAGTGTTTAACGTAAGTACAAGCATTTGATAGAAACATTGTGAGCATTCCATAGCATGGAATAATTACTAAAATGGTAATGATCGTAAATAGTTCTGTTCTCAAAGTATATATTCCATCAATCATATCATAAGGGAAGTATCCAAGAGTGATATTTAACCTATCTCAAGAATGGTATACAAATTTGGGGACTTACTAGTATGTTATTACATACCATTAAA

Fln Alignment:

AllPine_a_rep_c69874___MATGGGALDLASGMGGNIEKEQMLTAVEEYEKYHMYYGGDEGSRKSNYTDMVNKYYDLATSFYEYGWGESFHFAHRWKGETLRESIKRHEHFLALQLSLKPAMKVLDVGCGIGGPLREIARFSRTSITGLNNNAYQISRGKELNRQCGLDKSCDFVKGDFMKMPFSNDTFDAVYAIEATCHAPDAVGCYKEIKRVLKPGQLFAAYEWCMTDSFDPKNEEHQKIKAEIELGDGLPDIRTTNQCIEALKSAGFEVLFEENLTVSSTVPWYDPLDTSHFSLSSFRLTAIGRFLTRNMVRMLEFLRLAPEGSERVSSFLEKAAEGLVAGGRKDIFTPMYFFLARKPLSDNQS
C0PRC7________________MATVGGAIDLASGVGGNIEKGQMLTAVEEYEKYHMYYGGDEDSRKSNYTDMVNKYYDLATSFYEYGWGESFHFAHRWKGESLRESIKRHEHFLALHLCLKPAMKVLDVGCGIGGPLREIARFSRTSITGLNNNAYQISRGKELNRQCGLDRSCDFVKGDFMKMPFPDNTFDAVYAIEATCHAPDAVGCYKEIKRVLKPGQLFAAYEWCMTDSFDPKNEEHQKIKAEIELGDGLPDIRTTNQCFEALKSAGFEVLFEENLTVSSTVPWYAPLDTSHFSLSSFRLTALGRLLTRNMVRILEFLRLAPEGSERVSSFLEKAAEGLVEGGRKEIFTPMYFFVARKPLNDNQS

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
1412	88		11		0.991528
1418		12		87	0.992554
1591	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain