SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene127252

Length: 513 nt

UniGene Fasta

>sp_v3.0_unigene127252
GAGGTCTTGATTAAAATGAATACACCACCAAGGTCTGAAGTGCCCATCATAGAGCCTCAACAACTCGTCGATGCAGCTTCGCTCTCACTGGGATTTCCCACAAGATATGGCATGATGGCAGCCCAATTTAAGGCTTTCTTGGATGCAACAGGAGGGTTATGGCGAACTCAGCAATTGGCAGGCAAACCAGCAGGCATCTTTTATAGCACAGGATCTCAGGGTGGTGGCCAAGAAACTACTCCATTAACAGCCATAACCCAATTGGTTCACCATGGACTGATCTATGTACCAATTGGCTACACTTTTGGACCTGGAATGTTTGAGATGGAACAAGTCAAGGGTGGGAGCCCATATGGTGCAGGAACATTTGCTGGTGATGGTACACGTCAGCCAACTAAGCTAGAGTTGGATCAGGCTTTCCATCAGGGAAAATATATTTCTGGTATTGCAAAAAAATTGAAAGGAAGTGCTTGATTAGCAACCTATTTTTATACCTCCTGCTTACTGCCACAC

Ace file of the UniGene sp_v3.0_unigene127252

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Minor allergen Alt a, putative n=4 Tax=fabids RepID=B9T876_RICCO	-	-	0.0	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Sma3	Minor allergen Alt a, putative	-	-	8.453e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-hydroxy-1,4-benzoquinone reductase.	EC:1.6.5.7	-	4.16e-08	-

Source	KEGGs	Term	e value	Identity
Sma3	Chlorocyclohexane and chlorobenzene degradation	00361	4.16e-08	%
Sma3	Aminobenzoate degradation	00627	4.16e-08	%
Sma3	Metabolic pathways	01100	4.16e-08	%

Source	Gene names
Sma3	AGG3; AT4g27270; AT4g36750; At4g27270; At5g54500; At5g58800; B1070A12.15; C7A10.610; CHLREDRAFT_182581; CHLREDRAFT_182582; CHLREDRAFT_187688; CHLREDRAFT_8673; FAP191; GSVIVT00001798001; GSVIVT00005136001; GSVIVT00005137001; GSVIVT00006809001; GSVIVT000083

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	flagellum	GO:0019861	Cellular Component	-
Sma3	NADPH:quinone reductase activity	GO:0003960	Molecular Function	-
Sma3	FMN binding	GO:0010181	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor	GO:0016655	Molecular Function	-
Sma3	2-hydroxy-1,4-benzoquinone reductase activity	GO:0050625	Molecular Function	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3		GO:0016481	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	EMSY N-terminal	IPR005491	-	-
Sma3	Flavodoxin/nitric oxide synthase	IPR008254	-	-
Sma3	Flavoprotein WrbA	IPR010089	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G27270.1	Quinone reductase family protein chr4:13661458-13663243 REVERSE LENGTH=205	80%
RefSeq	Arabidopsis thaliana	NP_194457.2	Quinone reductase family protein [Arabidopsis thaliana]	80%
RefSeq	Populus trichocarpa	XP_002316697.1	predicted protein [Populus trichocarpa]	81%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTR1

Fln msg: your sequence is shorter than subject: 158 - 203

Fln protein: EVLIKMNTPPRSEVPIIEPQQLVDAASLSLGFPTRYGMMAAQFKAFLDATGGLWRTQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGLIYVPIGYTFGPGMFEMEQVKGGSPYGAGTFAGDGTRQPTKLELDQAFHQGKYISGIAKKLKGSA*

Protein Length: 159

Fln nts: GAGGTCTTGATTAAAATGAATACACCACCAAGGTCTGAAGTGCCCATCATAGAGCCTCAACAACTCGTCGATGCAGCTTCGCTCTCACTGGGATTTCCCACAAGATATGGCATGATGGCAGCCCAATTTAAGGCTTTCTTGGATGCAACAGGAGGGTTATGGCGAACTCAGCAATTGGCAGGCAAACCAGCAGGCATCTTTTATAGCACAGGATCTCAGGGTGGTGGCCAAGAAACTACTCCATTAACAGCCATAACCCAATTGGTTCACCATGGACTGATCTATGTACCAATTGGCTACACTTTTGGACCTGGAATGTTTGAGATGGAACAAGTCAAGGGTGGGAGCCCATATGGTGCAGGAACATTTGCTGGTGATGGTACACGTCAGCCAACTAAGCTAGAGTTGGATCAGGCTTTCCATCAGGGAAAATATATTTCTGGTATTGCAAAAAAATTGAAAGGAAGTGCTTGA___TTAGCAACCTATTTTTATACCTCCTGCTTACTGCCACAC

Fln Alignment:

AllPine_a_rep_c69661___EVLIKMNTPPRSEVPIIEPQQLVDAASLSLGFPTRYGMMAAQFKAFLDATGGLWRTQQLAGKPAGIFYXXXXXXXXXXXXPLTAITQLVHHGLIYVPIGYTFGPGMFEMEQVKGGSPYGAGTFAGDGTRQPTKLELDQAFHQGKYISGIAKKLKGS
A9NTR1________________DVLIKMNTPPKSEVPIIEPRQLADADALILGFPTRYGMMAAQFKAFLDATGGLWRTQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGLIYVPIGYTFGPGMFEMEQVKGGSPYGAGTFAGDGTRQPTKLELDQAFHQGKYISGIAKKLKGS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain