SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene127244

Length: 625 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene127244 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gibberellin regulated protein n=1 Tax=Medicago truncatula RepID=Q2HRJ5_MEDTR	-	-	2.0e-15	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Gibberellin regulated protein	IPR003854	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G39540.1	Gibberellin-regulated family protein chr2:16500866-16501241 FORWARD LENGTH=87	6.0e-20	53%
RefSeq	Arabidopsis thaliana	NP_181486.1	gibberellin-regulated protein [Arabidopsis thaliana]	8.0e-20	53%
RefSeq	Populus trichocarpa	XP_002327192.1	predicted protein [Populus trichocarpa]	1.0e-18	56%

Full-Lengther Next Prediction

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
173	66		33		0.997454
175		25		75	0.996473
176			25	75	0.996473
177		75		25	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
217	230	GTA GTA GTA GTA GT	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain