SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene127236

Length: 791 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene127236 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Minor allergen Alt a, putative n=4 Tax=fabids RepID=B9T876_RICCO	-	-	0.0	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Sma3	Minor allergen Alt a, putative	-	-	7.352e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-hydroxy-1,4-benzoquinone reductase.	EC:1.6.5.7	-	3.791e-08	-

Source	KEGGs	Term	e value	Identity
Sma3	Chlorocyclohexane and chlorobenzene degradation	00361	3.791e-08	%
Sma3	Aminobenzoate degradation	00627	3.791e-08	%
Sma3	Metabolic pathways	01100	3.791e-08	%

Source	Gene names
Sma3	AGG3; AT4g27270; AT4g36750; At4g27270; At5g54500; At5g58800; B1070A12.15; C7A10.610; CHLREDRAFT_182581; CHLREDRAFT_182582; GSVIVT00001798001; GSVIVT00005136001; GSVIVT00005137001; GSVIVT00006809001; GSVIVT00008337001; GSVIVT00008488001; GSVIVT00009800001;

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	flagellum	GO:0019861	Cellular Component	-
Sma3	NADPH:quinone reductase activity	GO:0003960	Molecular Function	-
Sma3	FMN binding	GO:0010181	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor	GO:0016655	Molecular Function	-
Sma3	2-hydroxy-1,4-benzoquinone reductase activity	GO:0050625	Molecular Function	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3		GO:0016481	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	EMSY N-terminal	IPR005491	-	-
Sma3	Flavodoxin/nitric oxide synthase	IPR008254	-	-
Sma3	Flavoprotein WrbA	IPR010089	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G27270.1	Quinone reductase family protein chr4:13661458-13663243 REVERSE LENGTH=205	80%
RefSeq	Arabidopsis thaliana	NP_194457.2	Quinone reductase family protein [Arabidopsis thaliana]	80%
RefSeq	Populus trichocarpa	XP_002319258.1	predicted protein [Populus trichocarpa]	79%

Full-Lengther Next Prediction

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
187	16		83		0.994512
367			10	90	0.90298
368	10			90	0.90298
371	10			90	0.90298
372			10	90	0.90298
373		10	90		0.90298
377			10	80	0.959698
378		10	90		0.90298
379		90		10	0.90298
383		88	11		0.923564
385	88	11			0.923564
420	14	85			0.993533
421			14	85	0.993533
422	85			14	0.993533
424	14	85			0.993533
425		14		85	0.993533
426	14			85	0.993533
429		14		85	0.993533
430	14			85	0.993533
431	14		85		0.993533
433		85	14		0.993533
435		14	85		0.993533
440		16		83	0.994512
443	80	20			0.995493
616			33	66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain