SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene127222

Length: 1725 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene127222

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	26S proteasome regulatory subunit N2 [Arabidopsis thaliana] gb\|AAF40455.1\|AC004809_13 Strong similarity to the SEN3-like tRNA-processing protein F24L7.13 from A. thaliana gi\|2914700 on BAC gb\|AC003974. EST gb\|AA712969 comes from this gene [Arabidopsis tha	-	-	0.0	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Sma3	26S proteasome regulatory subunit	-	-	3.069e-09	-

Source	Gene names
Sma3	At1g04810; At2g32730; B0402A04.3; CHLREDRAFT_192526; CYP87D8; F13M7.20; GSVIVT00009324001; GSVIVT00031868001; GSVIVT00035526001; MICPUCDRAFT_30827; MICPUN_60141; OSJNBa0060N03.12; OSTLU_39213; Os04g0608500; Os08g0224700; OsI_17319; OsI_28284; OsJ_16095; O

Source	GOs	Term	Type	Identity
Sma3	proteasome complex	GO:0000502	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	enzyme regulator activity	GO:0030234	Molecular Function	-
Sma3	regulation of protein catabolic process	GO:0042176	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Proteasome/cyclosome, regulatory subunit	IPR002015	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit	IPR016642	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G32730.1	26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit chr2:13880189-13885464 FORWARD LENGTH=1004	79%
RefSeq	Arabidopsis thaliana	NP_180832.1	26S proteasome regulatory subunit N2 [Arabidopsis thaliana]	79%
RefSeq	Populus trichocarpa	XP_002323770.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQS7

Fln msg: Overlapping hits, possible frame ERROR between 81 and 74, your sequence is shorter than subject: 466 - 773

Fln protein: AHDTQHEKIIRGLALGIALTVYGRxxxxADTLIEQMTRDQDPILRYGGMYALALAYRGTSNNKAIRRLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTALSEAISLLEPLTSDVVDFVRQGALIAMAMVLVQTNEAREPRVGSFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVSIKLSSRTKHDRITAVVGMAVFSQFWYWYPLVYFLSLSFAPTALIGLNYELKVPKFEFLSHAKPSLFEYPRPTTPPTTTSAVKLPTAVLSTSAKAKARAKKETDQKTAMDEGNISGEAGPMKGPKSSDKEGEAMQVDNVSEKKAEAERSCEILSNPARVVPAQEKYINFF*RE*ICAH*INAFRVCFTKGHQAIRTRSVC*IFD*FITFILRVTKPSSPHNQKCIFTDSSPSSLASSGNSSIPQELASAVSVEDG*

Protein Length: 467

Fln nts: GCACATGATACCCAACATGAAAAGATTATCAGAGGTCTGGCCCTTGGAATCGCACTAACTGTCTATGGAAGAxxxxxxxxxxxxGCTGATACACTTATAGAGCAAATGACTCGTGATCAGGATCCAATTCTACGCTATGGTGGGATGTATGCTCTGGCCCTCGCATACAGAGGCACATCCAATAACAAAGCCATTCGTCGTCTGTTGCACTTTGCTGTTTCCGATGTTAGTGATGATGTGAGAAGAACTGCGGTGCTGGCACTTGGATTTGTTTTATACTCTGAACCTGAGCAGACCCCACGAATAGTTTCTTTGTTGTCCGAGTCATATAATCCACATGTCAGATATGGAGCAGCCTTGGCAGTGGGTATCTCTTGTGCAGGCACAGCATTAAGTGAGGCCATTTCACTGCTGGAACCATTAACATCAGATGTGGTAGATTTTGTTCGTCAAGGTGCTCTTATAGCCATGGCTATGGTTCTTGTGCAAACAAATGAGGCACGCGAGCCTCGTGTAGGTAGCTTCAGGCGTCAACTTGAGAAGATCATTCTTGACAAGCATGAAGACACCATGAGCAAGATGGGTGCAATTTTAGCTTCTGGTATTTTAGATGCAGGTGGTCGGAATGTCTCAATTAAGTTGTCATCCAGGACTAAGCATGACAGAATTACTGCTGTTGTTGGTATGGCAGTATTTAGTCAATTTTGGTATTGGTATCCTCTTGTATATTTTCTGAGCCTCTCTTTTGCACCTACTGCTTTGATTGGGCTCAATTATGAACTGAAGGTCCCAAAATTTGAGTTTCTTTCACATGCCAAGCCCTCATTATTTGAGTACCCTCGTCCTACGACACCTCCAACAACAACTTCTGCAGTAAAATTACCAACTGCTGTTTTGTCTACTTCAGCAAAGGCTAAAGCTAGAGCAAAGAAAGAAACAGATCAGAAAACTGCTATGGATGAGGGAAACATTTCTGGTGAAGCAGGACCAATGAAAGGCCCAAAATCTAGTGATAAGGAGGGGGAAGCAATGCAGGTGGATAATGTATCTGAAAAGAAAGCTGAAGCTGAGCGATCTTGTGAAATTCTCTCAAATCCTGCTCGAGTTGTTCCAGCACAGGAAAAGTATATTAATTTTTTTTGAAGAGAGTAGATATGTGCCCATTAAATTAATGCCTTCAGGGTTTGTTTTACCAAGGGTCACCAAGCCATCAGAACCAGAAGTGTATGTTGAATTTTTGACTGATTCATCACCTTCATACTAAGGGTCACCAAGCCCTCAAGCCCTCATAACCAGAAGTGTATTTTCACTGATTCATCACCTTCATCATTAGCGTCATCTGGAAATTCGTCAATCCCCCAAGAACTTGCATCGGCTGTGTCTGTTGAGGATGGATAACCTCAACCACCACAATCTTTTGAATATAACACATGATCCAATATTGACCCCCAAGCACTTGCATCGGCTGTGTCTGTTGAGGATGGATAACCTCAACCACCACAATCTTTTGAATATAAGATATGATCCAACTGATTGGACATTGGCTGTGTCTGTTGAGGATGGAGACCTCAACCACCACAATCTTTTGAGTATAACATATGATCCAACTGATTGGACAGTTTTTAACGGAGGGAAGAAATCGTTTATTGAAAGTCTTTCGAAACGACATACCTTCCAACAGTTCTTTATTTCCATTTTTCATAATTTTTCAGAAGTCATTATGTGGC

Fln Alignment:

AllPine_a_rep_c69372___AHDTQHEKIIRGLALGIALTVYGRxxxADTLIEQMTRDQDPILRYGGMYALALAYRGTSNNKAIRRLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTALSEAISLLEPLTSDVVDFVRQGALIAMAMVLVQTNEAREPRVGSFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVSIKLSSRTKHDRITAVVGMAVFSQFWYWYPLVYFLSLSFAPTALIGLNYELKVPKFEFLSHAKPSLFEYPRXXXXXXXXSAVKLPTAVLSTSXXXXXXXXXETDQKTAMDEGNISGEAGPMKGPKSSDKEGEAMQVDNVSEKKAEAERSCEILSNPARVVPAQEKYINFF*RE*ICAH*INAFRVCFTKGHQAIRTRSVC*IFD*FITFILRVTKPSSPHNQKCIFTDXXXXXXXXXXXXXIPQELASAVSVEDG*PQPPQSFEYNT
B8LQS7________________AHDTQHEKIIRGLALGIALTVYGRxxxADTLIEQMTRDQDPILRYGGMYALALAYRGTSNNKAIRRLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTALSEAISLLEPLTSDVVDFVRQGALIAMAMVLVQTNEAREPRVGSFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVSIKLSSRTKHDRITAVVGMAVFSQFWYWYPLVYFLSLSFAPTALIGLNYELKVPKFEFLSHAKPSLFEYPRPTTPPTTTSAVKLPTAVLSTSAKAKARAKKETDQKTAMDEGNISGEAGPIKGSKSSDKEGEAIQLDNASEKKAEAEPSCEILSNPARVVPAQEKYIKFF---------------------EESRYVPIKLMPSGFV--LLRDTKPSEP--EVFVLTD-APSSLASSGNASIPQAPASAVSVEDGEPQPPQPFEFNT

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
447	11		88		0.991528
452	11			88	0.991528
455	88			11	0.991528
456			88	11	0.991528
505	12		87		0.992554
506		87		12	0.992554
509	12		87		0.992554
531		88	11		0.991528
554		14		85	0.993533
560	14		85		0.993533
561		85		14	0.993533
608			14	85	0.993533
643	12			87	0.992554
764	14			85	0.993533
823	85			14	0.993541
874		87	12		0.992554
887	87		12		0.992554
898		12		87	0.992554
1013	16	83			0.994512
1014		16		83	0.994512
1016			83	16	0.994512
1308	16		83		0.994512
1431	80		20		0.995493
1437	80			20	0.995493
1531		25		75	0.996473
1602		50	50		1.0
1603			25	75	0.996473
1604	75		25		0.996473
1610		50		50	1.0
1637	66			33	0.997455

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain