SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene127099

Length: 1218 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene127099

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L7 n=1 Tax=Elaeis guineensis RepID=B3TLT9_ELAGV	-	-	0.0	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	60S ribosomal protein L7	-	-	3.428e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:6.1.1.2-	-	7.038e-06	-

Source	Gene names
Sma3	AT2G01250; At1g72550; At1g80750; At2g01250; At2g44120; At3g13580; B1047A05.37; CHLREDRAFT_206194; F10A8.13; F28P22.26; GSVIVT00005247001; GSVIVT00005248001; GSVIVT00006768001; GSVIVT00008043001; GSVIVT00008359001; GSVIVT00011045001; GSVIVT00011268001; GSV

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	large ribosomal subunit	GO:0015934	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	phenylalanine-tRNA ligase activity	GO:0004826	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	transcription regulator activity	GO:0030528	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	phenylalanyl-tRNA aminoacylation	GO:0006432	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR000517	-	-
Sma3	Phenylalanyl-tRNA synthetase, class IIc, beta subunit, archae/euk cytosolic	IPR004531	-	-
Sma3	B3/B4 tRNA-binding domain	IPR005146	-	-
Sma3	tRNA synthetase, B5-domain	IPR005147	-	-
Sma3	Uncharacterised domain XH	IPR005379	-	-
Sma3	Ribosomal protein L7, eukaryotic	IPR005998	-	-
Sma3	Ribosomal protein L30, N-terminal	IPR012988	-	-
Sma3	Ribosomal protein L30, conserved site	IPR018038	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G01250.1	Ribosomal protein L30/L7 family protein chr2:132943-134264 REVERSE LENGTH=242	80%
RefSeq	Arabidopsis thaliana	NP_178234.1	60S ribosomal protein L7-2 [Arabidopsis thaliana]	80%
RefSeq	Populus trichocarpa	XP_002310943.1	predicted protein [Populus trichocarpa]	82%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9P1J6

Fln msg: Overlapping hits, possible frame ERROR between 510 and 504, W1: There is no M at the beginning,

Fln protein: NLRHPGYDLLLFVPESVLKKRKRNEEWEKNKKEQLDAAKSKRAQNRKLIFKRAEKYIKEYRDQERDLIRLKREAKLSGGFYVDPEAKLLFIIRIRGINDMHxxxxGILQLLRLRQIFNGVFLKVNKATVNMLQRVEPYVTYGYPNLKSIRELIYKRGYGKVNKQRIPLTDNAVIEQVLGQYGIICIEDLIHEIITVGPNFTKANNFLWPFKLSAPSGGLKKKRNHYIEGGDAGNRELKINEMIRRMN*

Protein Length: 249

Fln nts: GGAAAGAGAAACATTTGGACGAGGAAGCCACTGAGGATGAAGAAGTCATATACAAGATAGAGATTCCTGCCAATCGCTATGATCTACTATGTCTTGAAGGACTTGCTCAAGCATTACGCATATTTATTGGCAAAGATGAGGTTCCAGACTATAAAGTTCGGGACTTACCAGTCAGTTCTATGCTGAAGATGCACGTAAAACCTGAGACATCCTGGATACGACCTTTTGTTGTTTGTGCCAGAATCTGTGTTGAAGAAGAGGAAAAGAAATGAAGAATGGGAGAAGAATAAAAAGGAGCAGTTAGATGCTGCAAAATCAAAAAGAGCTCAAAACCGTAAGCTTATATTCAAGAGGGCTGAGAAATATATCAAGGAGTACAGGGACCAGGAGCGGGATCTCATCAGACTGAAGCGAGAAGCCAAACTGAGTGGAGGTTTCTATGTTGATCCAGAAGCCAAGCTGCTTTTCATTATTCGCATCCGTGGTATTAATGATATGCATxxxxxxxxxxxxGGGATCTTACAGCTATTGCGTTTGAGGCAGATCTTCAATGGCGTCTTCCTGAAAGTGAACAAAGCAACTGTGAATATGTTGCAGAGGGTTGAACCATACGTGACTTATGGCTATCCTAATTTGAAGAGTATTAGAGAGCTGATTTACAAAAGAGGTTATGGAAAGGTTAACAAGCAGAGGATTCCTCTGACAGACAACGCTGTTATTGAACAGGTTTTGGGTCAGTATGGAATCATCTGTATTGAAGATCTCATTCATGAGATAATTACTGTTGGTCCTAATTTCACAAAGGCAAACAACTTTTTATGGCCATTTAAGCTCAGTGCTCCATCTGGTGGGTTGAAGAAGAAAAGGAACCACTATATTGAGGGTGGAGATGCTGGAAATCGTGAGCTTAAAATTAATGAGATGATTAGGAGGATGAATTAGTAACATGATTATACTGTTATTTAGCAAAGTTAATTCTAGGTGCCTTTTTAGCATTTGGTCAATCTGTAAAGAGTTGCTTTACGGTTTTAGCATCAAACATCAAAAGGGGTATTCTTAACAATTTTTGGTAGGTAATTATATAGTTTGAGCTGTTCCACGGCGTAGATTTTCAAATACCTTTTGTTAGACACTGAACGTATAGCTAAATAATTTGATTCATATTATTGTGCTTTATATTTTTCAATTAAACGTAAAAATAATACAAATTGACATTGTA

Fln Alignment:

AllPine_a_rep_c68405___VPESVLXXXXXXXXXXXXXXXQLDAAKSKRAQNRKLIFKRAEKYIKEYRDQERDLIRLKREAKLSGGFYVDPEAKLLFIIRIRGINDMHPxxMGILQLLRLRQIFNGVFLKVNKATVNMLQRVEPYVTYGYPNLKSIRELIYKRGYGKVNKQRIPLTDNAVIEQVLGQYGXXXXXXXXXXXXTVGPNFTKANNFLWPFKLSAPSGGLKKKRNHYIEGGDAGNRELKINEMIRRMN
A9P1J6________________VPESVLKKRKRNEEWEKNKKEQLDAAKLKRAQNRKLIFKRAEKYIKEYRDQERDLIRLKRDAKLRGGFYVDPEAKLLFIIRIRGINDMHPxxRKILQLLRLRQIFNGVFLKVNKATVNMLQRVEPYVTYGYPNLKSIRELIYKRGYGKVNKQRIPLTDNAVIEQVLGQYGIICIEDLIHEIITVGPNFTKANNFLWPFKLSAPSGGLKKKRNHYIEGGDAGNRELKINELIRRMN

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
826		83		16	0.994512
830			16	83	0.994512
831			16	83	0.994512
941	88		11		0.991528
1005		12		87	0.992554
1165	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain