SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene127088

Length: 1013 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene127088

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L3-1 [Arabidopsis thaliana] ref\|NP_973966.1\| 60S ribosomal protein L3-1 [Arabidopsis thaliana] ref\|NP_001031146.1\| 60S ribosomal protein L3-1 [Arabidopsis thaliana] ref\|NP_001185148.1\| 60S ribosomal protein L3-1 [Arabidopsis thaliana	-	-	0.0	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Sma3	Ribosomal protein L3	-	-	8.169e-18	-

Source	Gene names
Sma3	ARP1; ARP2; AT1G61580; At1g43170; At1g61580; CHLREDRAFT_126189; Csf-3; EMB2207; GSVIVT00010223001; GSVIVT00031743001; GSVIVT00035280001; MICPUCDRAFT_31261; MICPUN_89851; OSTLU_23838; Os12g0167900; OsI_35258; OsI_37606; OsJ_35352; Ot01g00490; PHATR_13361;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L3	IPR000597	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G43170.1	ARP1, emb2207, RPL3A, RP1 ribosomal protein 1 chr1:16266992-16268631 FORWARD LENGTH=389	85%
RefSeq	Arabidopsis thaliana	NP_001185148.1	60S ribosomal protein L3-1 [Arabidopsis thaliana]	85%
RefSeq	Populus trichocarpa	XP_002302168.1	predicted protein [Populus trichocarpa]	85%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZI7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 85 aas, your sequence is shorter than subject: 269 - 389

Fln protein: MSHRKFEHPRHGSLGFLPRKRARRHRGKVKSFPRDDPSKPCKLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEAVTLIETPPMVIVGVVAYIKTPRGLRTLNTVWAQHLSEEVRRRFYKNWYRAKKKAFTKYAKKYDSEDGKKEIQAELEKMKKYATVIRVLAHTQIKKMKGLKQKKAHLMEIQVNGGTIAQKVDYAYNFFEKQVPIDALFQKDEMIDVIGVTKGKGYEGVVTRWGLRKVACIGAWHPARVSFTVARAGQNGYQSSY*

Protein Length: 270

Fln nts: ATGGTCGGAGGGTTTGTGTCAACATTAGGGTTTGGGTGAGTGGATAGGCTATTCAGGGCTCCCGACTAATAGTCGGGTGTTAGGGACTTTGGGGGAAGACAGGAGGAAGCAGGAGGGGGAGTTGCAGCTGAAGAG_-_ATGAGTCACAGGAAGTTCGAGCATCCCAGGCATGGCTCTCTGGGATTTCTCCCTCGCAAGAGGGCACGTAGACATAGGGGCAAAGTGAAGTCATTCCCTAGGGATGATCCATCGAAGCCCTGCAAGCTGACGGCCTTTTTGGGCTACAAGGCCGGCATGACCCACATCGTCAGAGAGGTCGAGAAGCCCGGATCCAAGCTTCACAAGAAGGAAACATGCGAGGCTGTGACGTTAATCGAGACCCCGCCAATGGTGATCGTGGGCGTTGTCGCTTATATCAAGACACCCAGAGGGCTTCGGACCCTTAACACAGTGTGGGCTCAGCACCTCAGCGAGGAGGTGCGGAGGCGGTTTTACAAAAACTGGTACAGGGCCAAGAAGAAGGCTTTCACTAAATACGCCAAGAAGTATGATTCCGAGGATGGTAAGAAGGAGATCCAGGCGGAGCTCGAGAAAATGAAGAAGTATGCAACCGTCATTAGGGTTCTTGCTCACACCCAGATTAAGAAGATGAAAGGATTGAAACAGAAGAAGGCACACCTGATGGAAATACAAGTTAATGGGGGAACAATTGCGCAGAAAGTAGATTATGCGTATAACTTCTTTGAGAAACAAGTTCCTATTGATGCTCTTTTCCAAAAAGATGAAATGATTGATGTTATTGGTGTCACAAAGGGTAAGGGCTATGAAGGTGTGGTAACCAGGTGGGGTTTGCGTAAGGTAGCTTGTATTGGTGCTTGGCATCCAGCTAGGGTTTCCTTTACTGTTGCCAGGGCTGGTCAGAATGGTTACCAATCATCGTACTGAGATGAATAAGAAGATCTCACAAGGCAATGACTGAATTCGATAGGACTGAGAAGGGTATAACACCAATGGGT

Fln Alignment:

AllPine_a_rep_c68281___MSHRKFEHPRHGSLGFLPRKRARRHRGKVKSFPRDDPSKPCKLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEAVTLIETPPMVIVGVVAYIKTPRGLRTLNTVWAQHLSEEVRRRFYKNWXXXXXXXXXXXXXXXDSEDGKKEIQAELEKMKKYATVIRVLAHTQIXXXXXXXXXXAHLMEIQVNGGTIAQKVDYAYNFFEKQVPIDALFQKDEMIDVIGVTKGKGYEGVVTRW-----------GLRKVACIGAWHPARVSFTVARAGQNGY
A9NZI7________________MSHRKFEHPRHGSLGFLPRKRARRHRGKVKSFPRDDQSKPCKLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEAVTLIETPPMVIVGVVAYIKTPRGLRTLNTVWAQHLSEEVRRRFYKNWYRAKKKAFTKYAKKYDSEEGKKDIQTELEKMKKYATVIRVLAHTQIKKMKGLKQKKAHLMEIQVNGGTVAQKVDYAYNFFEKQVPIDALFQKDEMVDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGY

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
170		87		12	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain