SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene127054

Length: 200 nt

UniGene Fasta

>sp_v3.0_unigene127054
AAGCGTGCTAACAGTGGAGAATCATCCAATCCATCTCCATGGTTTCAATTTCTTCATAGTTGGAAGAGGGTTTGGGAACTACGACCCTAACACGGATCCTGCCAGCTTCAATCTCGTGGATCCTCCTGAGCGCAACACTGTGGGTGTGCCGACAGGCGGTTGGACTGTCATTCGTTTCAGAGCTGACAATCCAGGTGTTT

Ace file of the UniGene sp_v3.0_unigene127054

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Laccase n=1 Tax=Pinus taeda RepID=Q9AUH9_PINTA	-	-	7.0e-34	100%
FL-Next	tr=Laccase; Pinus taeda (Loblolly pine).	-	-	0.0	100%
Sma3	Laccase, putative	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Laccase.	EC:1.10.3.2	-	0.0	-
Sma3	L-ascorbate oxidase.	EC:1.10.3.3	-	1.86653e-42	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Ascorbate and aldarate metabolism	00053		1.86653e-42	%
Sma3	Metabolic pathways	01100		1.86653e-42	%

Source	Gene names
Sma3	At1g18140; At2g29130; At2g30210; At2g38080; At2g40370; At3g09220; At5g01040; At5g01050; At5g01190; At5g03260; At5g05390; At5g07130; At5g09360; At5g58910; At5g60020; B1045D11.30; B1088C09.5; F15A17_290; F16M14.1; F3L24.9; F7J8.170; F7J8.20; F7J8.30; GLac1;

Source	GOs	Term	Type	Identity
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	laccase activity	GO:0008471	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	secondary cell wall biogenesis	GO:0009834	Biological Process	-
Sma3	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	-
Sma3	lignin catabolic process	GO:0046274	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Oxidoreductase, molybdopterin-binding domain	IPR000572	-	-
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Bacterial extracellular solute-binding family 1, conserved site	IPR006061	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-
Sma3	Laccase	IPR017761	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G03260.1	LAC11 laccase 11 chr5:777198-779338 REVERSE LENGTH=557	2.0e-34	78%
RefSeq	Arabidopsis thaliana	NP_195946.2	laccase 11 [Arabidopsis thaliana]	3.0e-34	78%
RefSeq	Populus trichocarpa	XP_002313847.1	predicted protein [Populus trichocarpa]	4.0e-35	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9AUH9

Fln msg: Distance to subject end: 41 aas, your sequence is shorter than subject: 66 - 577

Fln protein: SVLTVENHPIHLHGFNFFIVGRGFGNYDPNTDPASFNLVDPPERNTVGVPTGGWTVIRFRADNPGV

Protein Length: 67

Fln nts: AAGCGTGCTAACAGTGGAGAATCATCCAATCCATCTCCATGGTTTCAATTTCTTCATAGTTGGAAGAGGGTTTGGGAACTACGACCCTAACACGGATCCTGCCAGCTTCAATCTCGTGGATCCTCCTGAGCGCAACACTGTGGGTGTGCCGACAGGCGGTTGGACTGTCATTCGTTTCAGAGCTGACAATCCAGGTGTTT

Fln Alignment:

AllPine_a_rep_c68114___SVLTVENHPIHLHGFNFFIVGRGFGNYDPNTDPASFNLVDPPERNTVGVPTGGWTVIRFRADNPGV
Q9AUH9________________SVLTVENHPIHLHGFNFFIVGRGFGNYDPNTDPASFNLVDPPERNTVGVPTGGWTVIRFRADNPGV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain