SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene127035

Length: 1054 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene127035

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NC domain-containing protein [Oryza brachyantha]	-	-	5.0e-36	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%

Source	Gene names
Sma3	At3g02700; At3g02700/F16B3_33; At4g00905; At5g06370; F16B3.33; GSVIVT00008650001; GSVIVT00036843001; GSVIVT00038896001; OJ1323_A06.34; OJ1439_F07.19-1; Os05g0310600; Os08g0546900; Os09g0526800; OsI_19407; OsI_30139; OsI_30144; OsI_32111; OsJ_18000; OsJ_28

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Nitrite/sulphite reductase iron-sulphur/siroheam-binding site	IPR006066	-	-
Sma3	LRAT-like domain	IPR007053	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G00905.1	NC domain-containing protein-related chr4:387865-389060 FORWARD LENGTH=263	3.00018e-42	47%
RefSeq	Arabidopsis thaliana	NP_680550.1	NC domain-containing protein-like protein [Arabidopsis thaliana]	3.00018e-42	47%
RefSeq	Populus trichocarpa	XP_002302649.1	predicted protein [Populus trichocarpa]	3.9937e-43	51%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LN59

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 113 aas, putative chimeric sequence, your sequence is shorter than subject: 225 - 408

Fln protein: PNRSNCGLQNGNNGVMRSCLDCFLEGGAVHRFEYGVSVAVFLVQARGGTCTFEQSNPPETVIHRAEYLLQNGFANYDVISMNCEDFAIYCKTGFIVESHDSGSGQVAVLRAVMRAARYCFTSKYAYRVVFAAEPVGVAFGTVLNFAIGRYKGDIGVRVDKIKVPVEYLAVYFDSSIGSTPPVAGSSISRDRSSINGTESLNGATPMDRSSINGTESLNSATPSS*

Protein Length: 226

Fln nts: CCTAACCGGTCTAACTGTGGCTTACAAAATGGAAATAATGGAGTAATGCGTTCTTGTTTGGATTGCTTTCTTGAGGGAGGAGCTGTGCATCGATTTGAGTATGGTGTTAGTGTAGCTGTATTTTTGGTACAAGCCCGTGGAGGAACGTGCACATTTGAACAATCGAATCCCCCAGAAACAGTGATTCACCGTGCAGAGTACCTGCTTCAAAATGGGTTTGCAAACTACGATGTAATATCGATGAATTGTGAGGACTTCGCAATATACTGCAAGACAGGATTCATTGTTGAAAGTCATGACTCGGGAAGTGGGCAAGTAGCAGTACTGCGTGCTGTAATGCGTGCTGCTCGTTATTGTTTCACTTCAAAGTACGCATATAGAGTTGTGTTTGCTGCTGAACCAGTAGGCGTGGCCTTCGGGACGGTTCTAAATTTTGCTATAGGGAGATATAAAGGAGATATTGGTGTTCGCGTTGATAAAATTAAGGTGCCAGTGGAGTATTTGGCTGTATATTTTGATTCTTCAATTGGTAGTACGCCTCCAGTGGCTGGTAGTTCCATATCTAGGGACAGGAGCTCCATTAACGGCACAGAATCTCTCAATGGTGCAACGCCTATGGACAGAAGCTCCATTAACGGCACAGAATCTCTCAATAGTGCAACGCCCAGTTCGTAA___GTAACATGATGGTTTATAGTTGACGCATCCTCCATGAAAGTGAAATTTTCGAGTGGTAACAGTCTCCATGTAGAAGGATAAATTGTGTTGGGATTTAAACAAATTGAAGGTTTTATTGGGTCATGTAACGGGTTCTGGATTGGTTTGTGTCTCAGAAGTTTCAGGTCATAAATGGTGACATAATTGTGTGTAATGGATTGAATCTTAGTTGTGGGTGCTAGATGGGTTTGTGTCATACTAAAATTGAAATGTGTGCAATTGATTTCAGAGGACTAGATTGTCAATAGATCACTGGAGTGCTTTATAATTTGTGGAAGTAATATATCCAAAGTCATTCAGCGCAATCTAAATATAAGCACATGTTGCCCTAAGAGTAGTT

Fln Alignment:

AllPine_a_rep_c67945___NCGLQNGNNGVMRSCLDCFLEGGAVHRFEYGVSVAVFLVQARGGTCTFEQSNPPETVIHRAEYLLQNGFANYDVISMNCEDFAIYCKTGFIVESHDSG-SGQXXXXXXXXXXXXYCFTSKYAY-RVVFAAEPVGVAFGTVLNFAIGRYKGDIGVRVDKIKVPVEYLAVYFDSS
B8LN59________________SCGFQHGNSGVIRSCLDCFLEGGPVYRFEYGVSKAVFLAQVRGGTCTLAQSDIPGTVINRAIYLHKNGFGNYDLFSNNCEDFAIYCKTGFIVNRNASGRSGQ------VAAVNGVCSASRFAFDHRDMLNNSLGLALILAGTFFYNRFKADIGVRVDKTKVPVEDLAVYFDSS

SNPs (tot: 3)

Position	G %	T %	Probability
515	20	80	0.995493
516	20	80	0.995493
517	20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain