SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene127031

Length: 1019 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene127031

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Aspartate aminotransferase n=8 Tax=Pinaceae RepID=C0PSV4_PICSI	-	-	83%
FL-Next	sp=Aspartate aminotransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Sma3	Aspartate aminotransferase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Aspartate transaminase.	EC:2.6.1.1	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Alanine, aspartate and glutamate metabolism	00250	%
Sma3	Cysteine and methionine metabolism	00270	%
Sma3	Arginine and proline metabolism	00330	%
Sma3	Tyrosine metabolism	00350	%
Sma3	Phenylalanine metabolism	00360	%
Sma3	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	%
Sma3	Carbon fixation in photosynthetic organisms	00710	%
Sma3	Isoquinoline alkaloid biosynthesis	00950	%
Sma3	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	%
Sma3	Biosynthesis of plant hormones	01070	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	AAT; AAT-1; AAT-P1; AAT1; AAT1_2; AAT2; AAT_1; AAT_2; ASP1; ASP2; ASP3; ASP4; ASP5; AST1; AST3; AST4; AT4G31990; At1g62800; At2g30970; At4g31990; At5g11520; At5g19550; CHLREDRAFT_126943; CHLREDRAFT_174097; CHLREDRAFT_186959; CRAAT1; F15N18_110; F7F1.18; G

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrial matrix	GO:0005759	Cellular Component	-
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	L-aspartate:2-oxoglutarate aminotransferase activity	GO:0004069	Molecular Function	-
Sma3	transaminase activity	GO:0008483	Molecular Function	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-
Sma3	cellular amino acid metabolic process	GO:0006520	Biological Process	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-
Sma3	leaf senescence	GO:0010150	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aspartate/other aminotransferase	IPR000796	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Aminotransferase, class I/classII	IPR004839	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G19550.1	ASP2, AAT2 aspartate aminotransferase 2 chr5:6598201-6601597 FORWARD LENGTH=405	69%
RefSeq	Arabidopsis thaliana	NP_197456.1	aspartate aminotransferase [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002324997.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKC5

Fln msg: your sequence is shorter than subject: 259 - 424

Fln protein: KHYSQRIIYLPVPTWGNHPKIFTLGGLSVKTYRYYDPRTRGLDYQGMLEDLQAAPPGAIVLLHACAHNPTGVDPTQDQWVGIRQLVRSKGLLPFFDSAYQGFASGKPLCGCIVCALSIVCRSATVATRVESQLKLVIRPMYSSPPIHGALIVATILSDRNLNYNWTVELKNMADRIISMRHQLYDALKARGTPGDWSHIIKQIGMFTFTGLNKDQVAFMTAEYHIYLTSDGRISMAGLSSKTVPHLADAIHAAVLRRG*

Protein Length: 260

Fln nts: AAGCATTATAGCCAACGCATCATTTATCTTCCAGTACCCACATGGGGCAATCATCCCAAGATCTTTACTCTTGGAGGATTGAGTGTGAAGACATATCGCTATTATGATCCTAGAACACGTGGGCTTGATTACCAAGGTATGCTTGAAGATTTACAAGCAGCTCCACCTGGAGCTATAGTGCTCCTTCATGCATGTGCACATAATCCCACTGGTGTAGATCCTACACAAGACCAATGGGTAGGAATTCGGCAGTTAGTAAGATCAAAAGGTCTGCTGCCATTTTTCGACAGTGCTTATCAGGGATTTGCCAGTGGTAAGCCTTTATGCGGATGCATAGTCTGTGCTCTTAGTATTGTTTGCAGGAGTGCAACAGTGGCAACTAGAGTTGAAAGTCAGTTGAAATTGGTTATTCGCCCAATGTACTCAAGCCCCCCTATTCACGGTGCTTTGATTGTAGCAACCATTCTCAGTGACAGGAATCTTAATTACAATTGGACTGTTGAATTGAAAAACATGGCAGATCGCATTATTAGCATGCGCCATCAACTCTATGATGCTCTGAAGGCTCGCGGAACCCCTGGAGACTGGAGTCACATTATTAAGCAGATTGGAATGTTCACTTTTACTGGCCTGAACAAAGATCAAGTTGCATTTATGACTGCAGAGTACCATATTTATTTGACTTCTGACGGGAGGATAAGTATGGCAGGTCTGAGCTCTAAAACAGTCCCACATCTTGCAGATGCTATCCATGCTGCTGTTCTCCGCCGTGGTTAG___CAGCATGGTTTTCCATACAATAACTTTAGCATAAAATAAAACATGCAAGGCCTGAACTTGCAAAGCAGATTTTCTTGCAAGAGGCAAAGAACTGCAGAAAATTTACTATCTTCGTATCTTTTGATTTTTTGTGCAGTTCATTACTTATTGAGACTTGAATAATTTAGTGTACATAGCATCTCTTTCTAAAGTGATAAACTTTGAAATTATGTAGCAACTTATCCTTTAAACCTTTTATCAAA

Fln Alignment:

AllPine_a_rep_c67915___KHYSQRIIYLPVPTWGNHPKIFTLGGLSVKTYRYYDPRTRGLDYQGMLEDLQAAPPGAIVLLHACAHNPTGVDPTQDQWVGIRQLVRSKGLLPFFDSAYQGFASGK----------------------------PLCGCIVCALSIVCRSATVATRVESQLKLVIRPMYSSPPIHGALIVATILSDRNLNYNWTVELKNMADRIISMRHQLYDALKARGTPGDWSHIIKQIGMFTFTGLNKDQVAFMTAEYHIYLTSDGRISMAGLSSKTVPHLADAIHAAVLRRG
B8LKC5________________KHYSQHIIYIPVPTWGNHPKIFNLGGLSVKTYRYYDPRTSGLDYEGMLEDLHAAPPGAIVLLHACAHNPTGVDPTQDQWEGIRQLIRLKGLLPFFDSAYQGFASGSLDADAYSVRLFVGDGGECLIAQSFAKNMGLYGERVGALSIVCRSATVATRVESQLKLVIRPMYSSPPIHGASIVATILSDRNLYYNWTVELKNMADRIISMRHQLYDALKARGTPGDWSHIIKQIGMFTFTGLNKDQVSFMTAEYHIYLTSDGRISMAGLSSKTVPHLADAIHAAVLRLG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
521			88	11	0.991528

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain