SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene127010

Length: 3660 nt

UniGene Fasta

>sp_v3.0_unigene127010
GCTTTATATTTCTGCGGTTTGTGGATCTGTGGATGCGGTTTTATTTTTCTATGGTTCATTGTGCTATGAATGGGGTTTAATTCTAATACGGTTCGGGAATCTGTAAATGGGGTTTACAAATCGTAGGCTTACCTTCTTCAAAAGCCTTTCTATTGCTGCAGCCCTGCAAGAGGTGTGCATTGATATTGGTATCAGGCCATGCATTTCCTTTGTCGATGGTCTCCGGAATGTCCAACAACTGCTCCAATCGGCCGCCTTGGAACTTTATACTTACTTCGGAAGTGATATCACAAGAATCCCCCTATATTAATCTTCGTCTTTCCAATTCTCAACATATGTTGAATCTCGTTCTTCAATAACGATGGCGAACGAGAAGCTGCCGAAGCCAATATTCCGGAAAATGCTGCTGTGCAATCCAGATGACAAAGTGACCTAGCCTCTAGAGAAAAAAGCTAGACCCTATCTAATATCAAATGAGAACTGTTAATACAATATCCGACAAGGATCTTGGCTACAAATGCCATACAACAAAACTAAATCTTTAATACTAGTCTCTGCCCACAGACATAAAATGCTCAGTTTTCCTTCTGTAAATACTTGTGTAAAATCACCGTACATCAGAATCACTGACCAAAGGTATTAGAATTTTTTGTAAATTTTGCTAATTCGTTAATCGATTCTTTCGCTAATTCGTTAACTAATTCTTTCATAAAACCTATGGGGGAATGTTTTCTTTCGAAAATCCAGAGATTTACGAGTGAAGCCAGAGAACCCATCCACTATGATTAGATCAATCAGTTCGAAAAGTTTTACTCAGTTCAGCATTTCCTAATTTCAGAGTCTGAATATGAAGTGTCATGTATTGTTACGTTTCTAAGTTCTTCTCACTAAATAGTTACAACGTCTCTTCCATGGAAACCCACTTTTTCCCTCTCTTACATCATCGAGAGTCTATCACAACATCTTCTTCCATGGAAACTCACTCTTCACTCTCTGACATCATCGAGAAAGTCTATCACATGTTTTACAATAGAAACTGGAACTCACTCAAAAATGAGCTCAATGTATGGGTTACTATCTCCATTTTTGAGACAGAATATCCATGTAGTATTGCTGTTGGAACAGGATCAAATGCATCCATTTGTTTCTCCACTGACGATCCCAACCCTGTACTATCAGCATTTCCTTCCAAATATGTGATAAGAGGTTGTAAGCACTTCAAAGTAGGATTTTGGTGTTTCATTATTATGCTAGAATCTTAGAGAGTCCATGCAAACTGTGGTGATGTTAAATAAAAAATGGAAGTAATGAAGGAAGCAATTCCTTCAGAAGTTTAATCTGGAGAGAAATCGGGAAAATATTGGTCAATACATGGACTGAAATGAAGACATAGAAAGAAAGTGCTGGTGGCTTCATACTGTAGCCATATAACAGGGAACCATTTTCTTCACTATGACGGATGAAAACTTTTAAGTATAATTGCATAGAAAAGATATCAATATGCTGGTGAGCTGCATGCAGGATGTTCATGTAAAGTCATTAATGCATGACAAATTTAACTTGCTGAAGTGAACCTTCATCCACAAGCCGTGATAAAAATGAAGCACTTGCCAGAACACGGCTCTTTTACCTGTGAATAGCGCATCACTTTTTGTTAAGTGCCTGGCAAGGTCCGCAGATTCCATAAACTCCAAATGAACTTTTTCCCAGAGTTAAAGGTAGACAGGATATCCTTGCCTGTTATTTTTTTTGACAATAGTTGAACACTTGAAATCTCACGTGTAAAAATCAGATTCTACTAAAAACAAAGAAACATAATGCTGATTCGAAATAGAGAGATATAATCTCTTAGGCGGAGATCCACTCTCGTCTGTTTCTATTATCACCAGTTTGCTTTAATCCACTCTCGTCTGTTTCTATTATCGTCAGTTTGCTTTAATCCACTCTCGTCTGTTTCTATTATCACCAGTTTGCTTTAATCCACTCTCGTCTGTTTCTATTATCACCAATTTGCTTTATTGGAGTCCTAGGGCTTCTTTAGAAAACTTATCAGCTTGTCTCATTTAATTCTATGTGTACATGTTGAAATAATACATCTTCAAATCTGTTTCTTTGTTCTCTGACTTATTCCACTACAGAGATAAGAGTTGACTTATTCCACTACAGAGATAAGAGTTGACTTACGCAGATTATTAGTTCAATTTGCCCAATCTATTAATAGCTTTGAGTCGCCCAATATCAGAGGACTCGATATTCCTGTTCACTGCAATTTTTAAGAATAACCGTGTAGCACACATCTTATCTCTGTTATTTCAAATTGTTCCATGTGCAAAATTCAAATGCTTCTTTGAAGGAAATGTGCTGGTTTGTAAACATTGTATGGTATGCTGCCAGATCCACATATACCTGGGAGGCCTTGGCTTTTCTTCCTCAAAATATCTCCAATCTTTTGAGAAATCAATGGCTCGAAATTTTATAATACATGAAGGTTTTACCTTCATTGGCTTACATATTCCTTCATATGTATATTATTTGTATTTGGTTTATATAGAATGGTAACTGGTCTATATTTTACATGAATGCCATCCTAATATTATCTTGTTATATTTTGCAATTTTTAGCTTAATTTGTGTTCAAGATTATGAAGCTGTAGATGATGTATTTTTGTATATATACTCTTTAACTGCAGCAAGAACTCTGGTTTGGTTTTGCTGATCTCTCTAATACTTTCTATGTTTCTATGACTTCAATTTCAGGCTCGTGGATTGAAGAAACATTTAAAGAGGCTCAATGCTCCCAGGCATTGGATGCTTGACAAACTTGGTGCTTTTGCACCAAAACCATCTCCTGGTCCTCACAAGGGCAGGGAATGCCTGCCTCTTGTGGTTCTTCTTAGGAACAGGCTGAAGTATGCCCTCACATACCGTGAAGTCATAGCCATTGTAATGCAGAGACTTATTTCTGTTGATGGAAAAGTGAGGACAGATAAATGCTATCCTGCAGGGTTTATGGATGTCCTGTCGATTGCAAAAACAAATGAGAATTTTAGGCTTCTTTATGATGCAAAGGGTCGTTTCCGCTTGCATTCAATCAAAGACGAAGAAGCAAAGTATAAACTTTGCAAGGTTCGTTCTGTACAATTTGGAGATAAGGGTATCCCTTACCTCAACACTTATGATGGACGCACAATTAGGTACCCAGATCCATTGGTCAAGGCCAATGATACAATCAAGATTGATCTAGAGACAGGCAAAATCAAGGAGTTTATCAAGTTTGATGTTGGTAATGTTGTAATGGTTACTGGAGGCCGTAACAGAGGTCGTGTTGGAACCATTAAGCACAGAGAAAAGCATAAGGGTAGCTTTGAGATTATTCATGTGCAAGATGCTGCTGGGCAGGAATTTGCCACCCGACAGGGTAACGTGTTCACTATTGGAAAAGGCACAAAGCCTTGGGTTTCTTTACCCAAGGGTAAAGGTGTCAAGCTGTCCATCATTGATGAGGCCAGGAAACGCAATGCAGCTGCAACTGCTGCAGCATAAGTTTTGTTCATTAGAAAACTCGATAGTTTTTATGGTCAGAATTTGTTAGTTTACTCTGACTATTATCGGAAACTTTGTTGGGAAAACTTAGGAGCTACCATCGTTTTACTTCTGAACG

Ace file of the UniGene sp_v3.0_unigene127010

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal S4 protein [Glycine max] gb\|ACU21252.1\| unknown [Glycine max]	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	KOW	IPR005824	-	-
Sma3	Ribosomal protein S4e	IPR000876	-	-
Sma3	Ribosomal protein S4e, central	IPR013845	-	-
Sma3	Ribosomal protein S4e, N-terminal	IPR013843	-	-
Sma3	Ribosomal protein S4e, N-terminal, conserved site	IPR018199	-	-
Sma3	RNA-binding S4 domain	IPR002942	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G58420.1	Ribosomal protein S4 (RPS4A) family protein chr5:23619599-23620896 FORWARD LENGTH=262	85%
RefSeq	Arabidopsis thaliana	NP_200650.1	40S ribosomal protein S4-3 [Arabidopsis thaliana]	85%
RefSeq	Populus trichocarpa	XP_002329710.1	predicted protein [Populus trichocarpa]	85%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKK9

Fln msg: W1: There is no M at the beginning,

Fln protein: LQFQARGLKKHLKRLNAPRHWMLDKLGAFAPKPSPGPHKGRECLPLVVLLRNRLKYALTYREVIAIVMQRLISVDGKVRTDKCYPAGFMDVLSIAKTNENFRLLYDAKGRFRLHSIKDEEAKYKLCKVRSVQFGDKGIPYLNTYDGRTIRYPDPLVKANDTIKIDLETGKIKEFIKFDVGNVVMVTGGRNRGRVGTIKHREKHKGSFEIIHVQDAAGQEFATRQGNVFTIGKGTKPWVSLPKGKGVKLSIIDEARKRNAAATAAA*

Protein Length: 267

Fln nts: GCTTTATATTTCTGCGGTTTGTGGATCTGTGGATGCGGTTTTATTTTTCTATGGTTCATTGTGCTATGAATGGGGTTTAATTCTAATACGGTTCGGGAATCTGTAAATGGGGTTTACAAATCGTAGGCTTACCTTCTTCAAAAGCCTTTCTATTGCTGCAGCCCTGCAAGAGGTGTGCATTGATATTGGTATCAGGCCATGCATTTCCTTTGTCGATGGTCTCCGGAATGTCCAACAACTGCTCCAATCGGCCGCCTTGGAACTTTATACTTACTTCGGAAGTGATATCACAAGAATCCCCCTATATTAATCTTCGTCTTTCCAATTCTCAACATATGTTGAATCTCGTTCTTCAATAACGATGGCGAACGAGAAGCTGCCGAAGCCAATATTCCGGAAAATGCTGCTGTGCAATCCAGATGACAAAGTGACCTAGCCTCTAGAGAAAAAAGCTAGACCCTATCTAATATCAAATGAGAACTGTTAATACAATATCCGACAAGGATCTTGGCTACAAATGCCATACAACAAAACTAAATCTTTAATACTAGTCTCTGCCCACAGACATAAAATGCTCAGTTTTCCTTCTGTAAATACTTGTGTAAAATCACCGTACATCAGAATCACTGACCAAAGGTATTAGAATTTTTTGTAAATTTTGCTAATTCGTTAATCGATTCTTTCGCTAATTCGTTAACTAATTCTTTCATAAAACCTATGGGGGAATGTTTTCTTTCGAAAATCCAGAGATTTACGAGTGAAGCCAGAGAACCCATCCACTATGATTAGATCAATCAGTTCGAAAAGTTTTACTCAGTTCAGCATTTCCTAATTTCAGAGTCTGAATATGAAGTGTCATGTATTGTTACGTTTCTAAGTTCTTCTCACTAAATAGTTACAACGTCTCTTCCATGGAAACCCACTTTTTCCCTCTCTTACATCATCGAGAGTCTATCACAACATCTTCTTCCATGGAAACTCACTCTTCACTCTCTGACATCATCGAGAAAGTCTATCACATGTTTTACAATAGAAACTGGAACTCACTCAAAAATGAGCTCAATGTATGGGTTACTATCTCCATTTTTGAGACAGAATATCCATGTAGTATTGCTGTTGGAACAGGATCAAATGCATCCATTTGTTTCTCCACTGACGATCCCAACCCTGTACTATCAGCATTTCCTTCCAAATATGTGATAAGAGGTTGTAAGCACTTCAAAGTAGGATTTTGGTGTTTCATTATTATGCTAGAATCTTAGAGAGTCCATGCAAACTGTGGTGATGTTAAATAAAAAATGGAAGTAATGAAGGAAGCAATTCCTTCAGAAGTTTAATCTGGAGAGAAATCGGGAAAATATTGGTCAATACATGGACTGAAATGAAGACATAGAAAGAAAGTGCTGGTGGCTTCATACTGTAGCCATATAACAGGGAACCATTTTCTTCACTATGACGGATGAAAACTTTTAAGTATAATTGCATAGAAAAGATATCAATATGCTGGTGAGCTGCATGCAGGATGTTCATGTAAAGTCATTAATGCATGACAAATTTAACTTGCTGAAGTGAACCTTCATCCACAAGCCGTGATAAAAATGAAGCACTTGCCAGAACACGGCTCTTTTACCTGTGAATAGCGCATCACTTTTTGTTAAGTGCCTGGCAAGGTCCGCAGATTCCATAAACTCCAAATGAACTTTTTCCCAGAGTTAAAGGTAGACAGGATATCCTTGCCTGTTATTTTTTTTGACAATAGTTGAACACTTGAAATCTCACGTGTAAAAATCAGATTCTACTAAAAACAAAGAAACATAATGCTGATTCGAAATAGAGAGATATAATCTCTTAGGCGGAGATCCACTCTCGTCTGTTTCTATTATCACCAGTTTGCTTTAATCCACTCTCGTCTGTTTCTATTATCGTCAGTTTGCTTTAATCCACTCTCGTCTGTTTCTATTATCACCAGTTTGCTTTAATCCACTCTCGTCTGTTTCTATTATCACCAATTTGCTTTATTGGAGTCCTAGGGCTTCTTTAGAAAACTTATCAGCTTGTCTCATTTAATTCTATGTGTACATGTTGAAATAATACATCTTCAAATCTGTTTCTTTGTTCTCTGACTTATTCCACTACAGAGATAAGAGTTGACTTATTCCACTACAGAGATAAGAGTTGACTTACGCAGATTATTAGTTCAATTTGCCCAATCTATTAATAGCTTTGAGTCGCCCAATATCAGAGGACTCGATATTCCTGTTCACTGCAATTTTTAAGAATAACCGTGTAGCACACATCTTATCTCTGTTATTTCAAATTGTTCCATGTGCAAAATTCAAATGCTTCTTTGAAGGAAATGTGCTGGTTTGTAAACATTGTATGGTATGCTGCCAGATCCACATATACCTGGGAGGCCTTGGCTTTTCTTCCTCAAAATATCTCCAATCTTTTGAGAAATCAATGGCTCGAAATTTTATAATACATGAAGGTTTTACCTTCATTGGCTTACATATTCCTTCATATGTATATTATTTGTATTTGGTTTATATAGAATGGTAACTGGTCTATATTTTACATGAATGCCATCCTAATATTATCTTGTTATATTTTGCAATTTTTAGCTTAATTTGTGTTCAAGATTATGAAGCTGTAGATGATGTATTTTTGTATATATACTCTTTAACTGCAGCAAGAACTCTGGTTTGGTTTTGCTGATCTCTCTAATACTTTCTATGTTTCT_-_ATGACTTCAATTTCAGGCTCGTGGATTGAAGAAACATTTAAAGAGGCTCAATGCTCCCAGGCATTGGATGCTTGACAAACTTGGTGCTTTTGCACCAAAACCATCTCCTGGTCCTCACAAGGGCAGGGAATGCCTGCCTCTTGTGGTTCTTCTTAGGAACAGGCTGAAGTATGCCCTCACATACCGTGAAGTCATAGCCATTGTAATGCAGAGACTTATTTCTGTTGATGGAAAAGTGAGGACAGATAAATGCTATCCTGCAGGGTTTATGGATGTCCTGTCGATTGCAAAAACAAATGAGAATTTTAGGCTTCTTTATGATGCAAAGGGTCGTTTCCGCTTGCATTCAATCAAAGACGAAGAAGCAAAGTATAAACTTTGCAAGGTTCGTTCTGTACAATTTGGAGATAAGGGTATCCCTTACCTCAACACTTATGATGGACGCACAATTAGGTACCCAGATCCATTGGTCAAGGCCAATGATACAATCAAGATTGATCTAGAGACAGGCAAAATCAAGGAGTTTATCAAGTTTGATGTTGGTAATGTTGTAATGGTTACTGGAGGCCGTAACAGAGGTCGTGTTGGAACCATTAAGCACAGAGAAAAGCATAAGGGTAGCTTTGAGATTATTCATGTGCAAGATGCTGCTGGGCAGGAATTTGCCACCCGACAGGGTAACGTGTTCACTATTGGAAAAGGCACAAAGCCTTGGGTTTCTTTACCCAAGGGTAAAGGTGTCAAGCTGTCCATCATTGATGAGGCCAGGAAACGCAATGCAGCTGCAACTGCTGCAGCATAAGTTTTGTTCATTAGAAAACTCGATAGTTTTTATGGTCAGAATTTGTTAGTTTACTCTGACTATTATCGGAAACTTTGTTGGGAAAACTTAGGAGCTACCATCGTTTTACTTCTGAACG

Fln Alignment:

AllPine_a_rep_c67717___ARGLKKHLKRLNAPRHWMLDKLG-AFAPKPSPGPHKGRECLPLVVLLRNRLKYALTYREVIAIVMQRLISVDGKVRTDKCYPAGFMDVLSIAKTNENFRLLYDAKGRFRLHSIKDEEAKYKLCKVRSVQFGDKGIPYLNTYDGRTIRYPDPLVKANDTIKIDLETGKIKEFIKFDXXXXXXXXXXXXXXXXXXIKHREKHKGSFEIIHVQDAAGQEFATRQGNVFTIGKGTKPWVSLPKGKGVKLSIIDEARKRN
A9NKK9________________ARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSPGPHKGRECLPLVVLIRNRLKYALTYREVIAIVMQRLISVDGKVRTDKCYPAGFMDVLSIAKTNENFRLLYDAKGRFRLHSIKDEEAKYKLCKVRSVQFGDKGIPYLNTYDGRTIRYPDPLVKANDTIKIDLETGKIKEFIKFDVGNVVMVTGGRNRGRVGVIKHREKHKGSFEIIHVQDAAGQEFATRQGNVFTIGKGTKPWVSLPKGKGVKLSIIEEARKRH

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
3353		4	95		0.997494
3649		80		20	0.995495

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain