SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene126998

Length: 535 nt

UniGene Fasta

>sp_v3.0_unigene126998
ATATCATGCTGGTGGGAGATGGCATAAATGCCACTGTGATCACCGGTAATAGAAGCGTTGTGGACGGATGGACTACCTACCGCTCTGCAACAGTCGCTGTAGCTGGGCAAGGCTTTCTCGCTCGGGATATCACTTTCGAGAACACGGCGGGCCCAGAGAAGCATCAGGCTGTCGCTCTCCGCGTTGCCTCGGATCTATCAGCATTCTACCGTTGCAGCTTCAAAGGTTACCAAGATACTCTTTACGCACACTCTCTTCGACAATTTTACCGGGAATGTGAGATTTACGGTACAGTTGATTTTATCTTCGGCAACGCTGCAGCTGTGTTTCAAAACTGCAATCTCCTGGCTAGGAAACCGATGGAAAATCAAAAGAATTGCTTCACGGCTCAAGGAAGAGATGACCCAAATCAGAACACCGGAATCTCTATACAAAAATTGCACCGTCTCTGCTGCGCCTGATCTCGCTCCAGTGAAGAGCTTCTTTCCAGACATTCTTGGGGAGGCCATGGAAAAATTACTCTCGCACAGTTTAT

Ace file of the UniGene sp_v3.0_unigene126998

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pectinesterase n=1 Tax=Populus trichocarpa RepID=B9GSC5_POPTR	-	-	77%
FL-Next	sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Sma3	Pectinesterase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Pectinesterase.	EC:3.1.1.11	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Pentose and glucuronate interconversions	00040	%
Sma3	Starch and sucrose metabolism	00500	%
Sma3	Metabolic pathways	01100	%

Source	Gene names
Sma3	ARATH1; ARATH12; ARATH13; ARATH16; ARATH17; ARATH20; ARATH21; ARATH22; ARATH24; ARATH25; ARATH27; ARATH28; ARATH32; ARATH33; ARATH34; ARATH35; ARATH36; ARATH38; ARATH39; ARATH4; ARATH40; ARATH41; ARATH44; ARATH45; ARATH46; ARATH47; ARATH59; ARATH6; ARATH6

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	enzyme inhibitor activity	GO:0004857	Molecular Function	-
Sma3	pectinesterase activity	GO:0030599	Molecular Function	-
Sma3	aspartyl esterase activity	GO:0045330	Molecular Function	-
Sma3	fruit ripening	GO:0009835	Biological Process	-
Sma3	cell wall modification	GO:0042545	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Pectinesterase, catalytic	IPR000070	-	-
Sma3	Ribosome-binding factor A	IPR000238	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Pectinesterase inhibitor	IPR006501	-	-
Sma3	Carbohydrate-binding/sugar hydrolysis domain	IPR006633	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Pectinesterase, active site	IPR018040	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G04970.1	Plant invertase/pectin methylesterase inhibitor superfamily chr5:1464262-1467001 REVERSE LENGTH=624	74%
RefSeq	Arabidopsis thaliana	NP_566379.1	pectinesterase 25 [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002310960.1	predicted protein, partial [Populus trichocarpa]	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PT44

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 84 aas, your sequence is shorter than subject: 153 - 601

Fln protein: IMLVGDGINATVITGNRSVVDGWTTYRSATVAVAGQGFLARDITFENTAGPEKHQAVALRVASDLSAFYRCSFKGYQDTLYAHSLRQFYRECEIYGTVDFIFGNAAAVFQNCNLLARKPMENQKNCFTAQGRDDPNQNTGISIQKLHRLCCA*

Protein Length: 154

Fln nts: ATATCATGCTGGTGGGAGATGGCATAAATGCCACTGTGATCACCGGTAATAGAAGCGTTGTGGACGGATGGACTACCTACCGCTCTGCAACAGTCGCTGTAGCTGGGCAAGGCTTTCTCGCTCGGGATATCACTTTCGAGAACACGGCGGGCCCAGAGAAGCATCAGGCTGTCGCTCTCCGCGTTGCCTCGGATCTATCAGCATTCTACCGTTGCAGCTTCAAAGGTTACCAAGATACTCTTTACGCACACTCTCTTCGACAATTTTACCGGGAATGTGAGATTTACGGTACAGTTGATTTTATCTTCGGCAACGCTGCAGCTGTGTTTCAAAACTGCAATCTCCTGGCTAGGAAACCGATGGAAAATCAAAAGAATTGCTTCACGGCTCAAGGAAGAGATGACCCAAATCAGAACACCGGAATCTCTATACAAAAATTGCACCGTCTCTGCTGCGCCTGATCTCGCTCCAGTGAAGAGCTTCTTTCCAGACATTCTTGGGGAGGCCATGGAAAAATTACTCTCGCACAGTTTAT

Fln Alignment:

AllPine_a_rep_c67629___IMLVGDGINATVITGNRSVVDGWTTYRSATVAVAGQGFLARDITFENTAGPEKHQAVALRVASDLSAFYRCSFKGYQDTLYAHSLRQFYRECEIYGTVDFIFGNAAAVFQNCNLLARKPMENQKNCFTAQGRDDPNQNTGISIQ
C0PT44________________LMFIGDGIGATVVAGNRNVKDGYTTYRSATVAVNGNGFIARDITFENTAGAAKHQAVALRVGSDFSAFYRCSFQGYQDTLYVHSLRQFYRECNVYGTVDFIFGNAAVVLQNCNLFARKPLANQQIVYTAQGRQDPNENTGISIQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain