SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene126988

Length: 772 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene126988

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Lipoxygenase n=2 Tax=Populus trichocarpa RepID=B9HJW6_POPTR	-	-	62%
FL-Next	sp=Lipoxygenase; Taxus wallichiana var. chinensis (Chinese yew) (Taxus chinensis).	-	-	70%
Sma3	Lipoxygenase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Lipoxygenase.	EC:1.13.11.12	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Linoleic acid metabolism	00591	%
Sma3	alpha-Linolenic acid metabolism	00592	%
Sma3	Biosynthesis of plant hormones	01070	%
Sma3	Metabolic pathways	01100	%

Source	Gene names
Sma3	At1g55020; F14C21.3; F14C21.54; GSVIVT00008869001; GSVIVT00013309001; GSVIVT00019960001; GSVIVT00022800001; GSVIVT00022801001; GSVIVT00035067001; LOC_Os03g49260; LOC_Os03g49350; LOC_Os03g49380; LOC_Os03g52860; LOC_Os12g37260; LOX; LOX-3; LOX1; LOX1.1; LOX

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	lipoxygenase activity	GO:0016165	Molecular Function	-
Sma3	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	GO:0016702	Molecular Function	-
Sma3	metal ion binding	GO:0046872	Molecular Function	-
Sma3	oxylipin biosynthetic process	GO:0031408	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Lipoxygenase	IPR000907	-	-
Sma3	Lipoxygenase, LH2	IPR001024	-	-
Sma3	Lipoxygenase, plant	IPR001246	-	-
Sma3	Lipoxygenase, C-terminal	IPR013819	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G55020.1	LOX1, ATLOX1 lipoxygenase 1 chr1:20525798-20530143 FORWARD LENGTH=859	61%
RefSeq	Arabidopsis thaliana	NP_175900.1	lipoxygenase 1 [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002315780.1	predicted protein [Populus trichocarpa]	64%

Full-Lengther Next Prediction

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
378	25		75		0.996473
409	80	20			0.995493
410	80	20			0.995493
422		80	20		0.995493
436	20	80			0.995493
465	83		16		0.994512
497	30		70		1.0
514	70		30		1.0
524		70		30	1.0
595			70	30	1.0
604		37		62	1.0
617		62	37		1.0
663	28		71		1.0
667	28	71			1.0
676	83		16		0.994512
687		33		66	1.0
695	16			83	0.99452
720		83		16	0.994514
729	16			83	0.994515
731		16		83	0.994519
735		83		16	0.994514
739	16		83		0.994516
743	80		20		0.995493
748	80		20		0.995493
757			20	80	0.995505

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain