SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene126947

Length: 480 nt

UniGene Fasta

>sp_v3.0_unigene126947
TGTCGTGACCTTGGCTGTCACTCAATATCGCTAGATGGGTCATTGTTGTGGGAGGAAAGGAAGCAGCCATGTCGAAGAGAGGTACAGATCCTAACCTTTCAATCCAATTTGAATGAGTTCTGAATGTAAAATTTCTTATTCATTACAATCTGTCATCCGTGCAGGGCGCGGAGGGAGCGCTGGAAACAAGTTCAGGATGTCACTGGGTCTCCCAGTGGCGGCCACGGTGAATTGCGCAGACAACACAGGTGCCAAGAACTTATACATCATCAGTGTTAAGGGAATAAAGGGTCGTCTCAACAGGCTTCCTGCAGCATGCGTCGGAGATATGGTCATGGCTACAGTCAAGAAGGGATGCCTGCTGTCATTGTTCGTCAGAGGAAGCCGTGGAGGCGAAAGGACGGTGTTTACATGTATTTTGAAGACAATGCTGGAGTAATAGTAAATCCGAAAGGAGAAATGAAAGGATCTGCTATTACA

Ace file of the UniGene sp_v3.0_unigene126947

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ribosomal Pr 117 [Triticum aestivum]	-	-	0.0	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	60S ribosomal protein L23	-	-	1.151e-10	-

Source	Gene names
Sma3	At1g04480; CHLREDRAFT_159282; F19P19.5; GSVIVT00020335001; GSVIVT00028518001; LOC_Os03g04590; LOC_Os10g32920; MICPUCDRAFT_37554; MICPUN_90970; OJ1293_E04.23; OSJNBa0006L06.7; OSTLU_18267; Os02g0814700; Os03g0139100; Os10g0466700; OsI_09417; OsI_09939; OsI

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L14b/L23e	IPR000218	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G04400.1	emb2171 Ribosomal protein L14p/L23e family protein chr3:1167339-1168308 FORWARD LENGTH=140	92%
RefSeq	Arabidopsis thaliana	NP_563707.1	60S ribosomal protein L23 [Arabidopsis thaliana]	92%
RefSeq	Populus trichocarpa	XP_002335793.1	predicted protein [Populus trichocarpa]	95%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NS49

Fln msg: Warning!, your query overlaps and the subject is separated, Distance to subject end: 22 aas, your sequence is shorter than subject: 123 - 140

Fln protein: MSSECKISYSLQSVIRAGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPAACVGDMVMATVKKxxPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAIT

Protein Length: 124

Fln nts: TGTCGTGACCTTGGCTGTCACTCAATATCGCTAGATGGGTCATTGTTGTGGGAGGAAAGGAAGCAGCCATGTCGAAGAGAGGTACAGATCCTAACCTTTCAATCCAATTTGA_-_ATGAGTTCTGAATGTAAAATTTCTTATTCATTACAATCTGTCATCCGTGCAGGGCGCGGAGGGAGCGCTGGAAACAAGTTCAGGATGTCACTGGGTCTCCCAGTGGCGGCCACGGTGAATTGCGCAGACAACACAGGTGCCAAGAACTTATACATCATCAGTGTTAAGGGAATAAAGGGTCGTCTCAACAGGCTTCCTGCAGCATGCGTCGGAGATATGGTCATGGCTACAGTCAAGAAGxxxxxxCCTGCTGTCATTGTTCGTCAGAGGAAGCCGTGGAGGCGAAAGGACGGTGTTTACATGTATTTTGAAGACAATGCTGGAGTAATAGTAAATCCGAAAGGAGAAATGAAAGGATCTGCTATTACA

Fln Alignment:

AllPine_a_rep_c67292___RAGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPAACVGDMVMATVKKGxxxxxxxxMPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAIT
A9NS49________________KRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPAACVGDMVMATVKKGxxxxxxxxMPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAIT

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
158	10	90			0.90298
169	16		83		0.999991
170		83		16	0.999991
173	83		16		0.999991

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain