SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene126858

Length: 1416 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene126858 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chloroplast oxygen-evolving protein (Fragment) n=1 Tax=Arachis diogoi RepID=E3NYU3_9FABA	-	-	0.0	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Sma3	OEE3	-	-	5.166e-25	-

Source	Gene names
Sma3	At4g05180; At4g21280; C17L7.100; F7J7.220; GSVIVT00012553001; LOC_Os07g36080; OEE3; OJ1582_D10.19; Os07g0544800; OsI_025465; OsJ_24632; PHYPADRAFT_162315; PHYPADRAFT_173848; PHYPADRAFT_192554; PHYPADRAFT_55576; POPTRDRAFT_831063; POPTRDRAFT_834003; PSBQ;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	oxygen evolving complex	GO:0009654	Cellular Component	-
Sma3	extrinsic to membrane	GO:0019898	Cellular Component	-
Sma3	thylakoid lumen	GO:0031977	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	photosynthesis	GO:0015979	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Photosystem II PsbQ, oxygen evolving complex	IPR008797	-	-
Sma3		IPR013089	-	-
Sma3	Development/cell death domain	IPR013989	-	-
Sma3		IPR017909	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G21280.2	PSBQ, PSBQA, PSBQ-1 photosystem II subunit QA chr4:11334446-11335587 FORWARD LENGTH=224	74%
RefSeq	Arabidopsis thaliana	NP_193860.1	oxygen-evolving enhancer protein 3-1 [Arabidopsis thaliana]	74%
RefSeq	Populus trichocarpa	XP_002317273.1	hypothetical protein POPTRDRAFT_834003 [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9P1P9

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 173 - 219

Fln protein: RSISSLSNSSRRISSRRSSSLRNSSLRSSSLRSSSRRSSSRRGTLLSDEARDLELPLKERFYIQPLSADQAAARAKESAKQILEVKKLIDKKAWPYVQNDLRSKASYLRYDLNTVISSKPKDQKKPLKTLTSKLFDTLDNLDYAARSKDAPNAEKYYAETVTALNDVISKLG*

Protein Length: 174

Fln nts: ACTTACACGGAATCACAACCACTATAATTATGCATTTTTCTCAACAAGAAGCTCCCACAATATCCCTTGTGATAACAATACATCTATCATATCACAATTCTAAATGAAGACTTCTATAATTCGATCCACCATATCAAATATGCAGTTTCCAAACTGAAAATCATAATGGTGTTCAGAACAAAATTACGCAATAATCTCAAATAGTCTAGTACCGTACCAATTAGATCAGTTATTAAGACTGATTCATAACTAAAACTATGGAATGAAACTATAGTAAGCCTATGATTCAAAATTCAGCAGCTTATAAATCTAGCGATACAGCGAAGATGATCCGAGATATGCAGGAGGGCCTCCAGCAACAGAGGCTCCTAAATCAGGTCGACGTAAATCCCTTTGCAGAAGAGGGTCCGCATAGTAGCTTTCATTTGGCACATCACCTAACGGCTTTCGATAATCCGCCTCCAACCTCTGACGATACAATGATTCAATGCTTGGATCAACCCGGCTCTGATAATCTAACTCAGGTTGCTTTGGTAATAGACTACCATATGGATCTTGAGCTCGCAGGGTCGCATATGGATCTTGTGATTGTAGACTCGCATATGGATCTTGTGCTTGAAGAGGAGCCTGAGGAATATAATCCCTTCCAGCTCCATATCGTAATAACTCTCTCTCAGCTATAGCAGGATCAACACCATATCCAGTTAAAGGAGCCTGAGGATAATCAGTACGTGCTGCACGTCTGGCTTCCTCCTGATAGCGTAGCATATCTTCTCTCAGCAATTCCTCTCGGCGCATTTCTTCTCGACGCAGTTCCTCTCTGCGTAATTCCTCTCTGCGCAGTTCCTCTCTTAGGAGCTCCTCTCGACGTAGTTCCTCTCGACGCGGGACGTTGCTGTCAGACGAGGCGAGGGACCTGGAACTGCCGTTGAAGGAACGGTTCTATATTCAGCCCCTCTCGGCGGACCAGGCGGCTGCGAGAGCCAAGGAATCCGCGAAGCAAATCCTGGAGGTGAAAAAGCTGATAGATAAGAAGGCGTGGCCGTACGTCCAGAACGACCTCCGCTCCAAGGCTTCTTACCTTCGCTACGACCTCAACACCGTTATCTCCTCAAAGCCCAAGGACCAGAAGAAGCCCCTCAAAACCCTCACCAGCAAGCTTTTTGACACCCTTGACAACCTGGACTACGCTGCAAGGAGCAAGGATGCACCCAATGCAGAGAAATACTATGCAGAGACTGTGACCGCACTGAATGATGTCATTTCCAAGCTTGGTTAA___GCTGTATCGTTGTAACAAACTTAGCATCAATTTATGCTTTGCTGCATCTCCATCTTTTATGTAATAACGTTCTTGTTCCCATACGTTCACTGTCACATTTTCTGCTCAAAATATTCGACTTTTGTTCAATAATCTAG

Fln Alignment:

AllPine_a_rep_c66474___GTLLSDEARDLELPLKERFYIQPLSADQAAARAKESAKQILEVKKLIDKKAWPYVQNDLRSKASYLRYDLNTVISSKPKDQKKPLKTLTSKLFDTLDNLDYAARSKDAPNAEKYYAETVTALNDVISKLG
A9P1P9________________GTLLSDEARDLDLPLKERFYIQPLSVEQAAARAKESAKEILEVKKLIDKKAWPYVQNDLRSKASYLRYDLNTVISSKPKDQKKPLKTLTSKLFDTLDNLDYAARSKDAPKAEKYYAETVSALNDVISKLG

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1008	96		3		0.991825
1088			93	6	0.999998
1368	94		5		0.998397
1388	93		6		0.99903
1415		9		90	0.999872
1424	10			89	0.999919
1451	13	80		6	0.999961
1453		6	80		0.999961
1454		13		86	0.999973
1455	10		90		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain