SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene126838

Length: 456 nt

UniGene Fasta

>sp_v3.0_unigene126838
AGCTCTTGCAGTAGTAGTCGGGAGAGAGATATAAGGGTACGGAAAGGATGGTTGGTTATGATGGTGATCTTTCTGGGTCTCCAGTTGAAGCTGCATCAATGGTAACTCCTTTTGTTCCTTCAGTTGGTACAGATAGGGTTAACCGCTCTAATTGTAGGACCTGGCATCACAATGGTGACAATCAACGCATCTCTGATTGTAGCACCTAGCATCACATACAAAAGCTCAGGATCTACCATTGCATATCTTAAAGGGGCTGCACAAATGTATGAGAAGGGCACTTTAGCTAGTGTGGACATAAGTTTTCTAGCGGATGCACATATATGTGCTTATGAAGATCCATCTGCCTATGGGAGGTATATTTGTTTCAATCAAATAGTCAGTAATAAGAAGTTGACTGGATTGATGGTTGGATATGGAAATCGTGCAACCCTAAGCAGCTAATTGTAAGACATT

Ace file of the UniGene sp_v3.0_unigene126838

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cinnamoyl-CoA reductase-like protein n=4 Tax=Brassicaceae RepID=Q8LEH3_ARATH	-	-	1.0e-18	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%

Source	Gene names
Sma3	AT4g30470; At2g23910; At4g30470; GSVIVT00015022001; PHYPADRAFT_122687; PHYPADRAFT_175784; PHYPADRAFT_222761; POPTRDRAFT_551729; POPTRDRAFT_558970; RCOM_1584910; VITISV_001847;

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	coenzyme binding	GO:0050662	Molecular Function	-
Sma3	cellular metabolic process	GO:0044237	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	-
Sma3	Protein of unknown function DUF1005	IPR010410	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G30470.1	NAD(P)-binding Rossmann-fold superfamily protein chr4:14894263-14896506 FORWARD LENGTH=303	7.0e-24	55%
RefSeq	Arabidopsis thaliana	NP_194776.1	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]	9.0e-24	55%
RefSeq	Populus trichocarpa	XP_002308427.1	predicted protein [Populus trichocarpa]	5.0e-22	50%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NL44

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 148 - 314

Fln protein: SSCSSSRERDIRVRKGWLVMMVIFLGLQLKLHQW*LLLFLQLVQIGLTALIVGPGITMVTINASLIVAPSITYKSSGSTIAYLKGAAQMYEKGTLASVDISFLADAHICAYEDPSAYGRYICFNQIVSNKKLTGLMVGYGNRATLSS*

Protein Length: 149

Fln nts: AGCTCTTGCAGTAGTAGTCGGGAGAGAGATATAAGGGTACGGAAAGGATGGTTGGTTATGATGGTGATCTTTCTGGGTCTCCAGTTGAAGCTGCATCAATGGTAACTCCTTTTGTTCCTTCAGTTGGTACAGATAGGGTTAACCGCTCTAATTGTAGGACCTGGCATCACAATGGTGACAATCAACGCATCTCTGATTGTAGCACCTAGCATCACATACAAAAGCTCAGGATCTACCATTGCATATCTTAAAGGGGCTGCACAAATGTATGAGAAGGGCACTTTAGCTAGTGTGGACATAAGTTTTCTAGCGGATGCACATATATGTGCTTATGAAGATCCATCTGCCTATGGGAGGTATATTTGTTTCAATCAAATAGTCAGTAATAAGAAGTTGACTGGATTGATGGTTGGATATGGAAATCGTGCAACCCTAAGCAGCTAA___TTGTAAGACATT

Fln Alignment:

AllPine_a_rep_c66386___ALIVGPGITMVTINASLIVAPSITYKSSGSTIAYLKGAAQMYEKGTLASVDISFLADAHICAYEDPSAYGRYICFNQIV---------------------------------SNKKLTGLMVGYGNRATLSS
A9NL44________________ALAMDRGLNMVTINASLIVGPGITYKSSGSTIAYLKGAAQMYEKGTLSSVDIRFLADAHICAYEDPSAYGRYICFNQIVSNAEDVANLAQSLRHLVPFPDRFEDSTVHQQRLSNKKLTGLMVGFGNRATLSS

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
66			33	66	0.997455
166		75	25		0.996473
167	75			25	0.996473
169		75	25		0.996474
171	25	75			0.996474
172	75			25	0.996474
204		66	33		0.997452
209	75		25		0.99649
297	20		80		0.995493
391			33	66	0.997452
392	66	33			0.997452
396	66		33		0.997452
398	33			66	0.997452
406		33	66		0.997452
408	33			66	0.997452
411	75			25	0.996473
413	25		75		0.996473
415		25		75	0.996475
416	25			75	0.996475
417		25	75		0.996474

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain