SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene126830

Length: 808 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene126830 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative ribosomal-protein S6 kinase-like protein n=1 Tax=Solanum lycopersicum RepID=Q56R02_SOLLC	-	-	9.99967e-42	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	Malate dehydrogenase	-	-	8.91506e-42	-

Source	ECs	Term	Type	e value	Identity
Sma3	Malate dehydrogenase.	EC:1.1.1.37	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Citrate cycle (TCA cycle)	00020	%
Sma3	Pyruvate metabolism	00620	%
Sma3	Glyoxylate and dicarboxylate metabolism	00630	%
Sma3	Methane metabolism	00680	%
Sma3	Carbon fixation in photosynthetic organisms	00710	%
Sma3	Carbon fixation pathways in prokaryotes	00720	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Biosynthesis of terpenoids and steroids	01062	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	%
Sma3	Biosynthesis of alkaloids derived from histidine and purine	01065	%
Sma3	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	%
Sma3	Biosynthesis of plant hormones	01070	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	AT1G04410; AT3G08720; ATPK1; ATPK19; ATPK6; Aspk11; At1g04410; At3g08720; At3g08730; At5g43330; At5g56720; CHLREDRAFT_158129; CHLREDRAFT_39110; CMDH; F17O14.19; F17O14.20; F19P19.13; GSVIVT00016180001; GSVIVT00019169001; GSVIVT00028594001; GSVIVT000285950

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3		GO:0008415	Molecular Function	-
Sma3	malate dehydrogenase activity	GO:0016615	Molecular Function	-
Sma3	L-malate dehydrogenase activity	GO:0030060	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	glycolysis	GO:0006096	Biological Process	-
Sma3	tricarboxylic acid cycle	GO:0006099	Biological Process	-
Sma3	malate metabolic process	GO:0006108	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	positive regulation of translation	GO:0045727	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	AGC-kinase, C-terminal	IPR000961	-	-
Sma3	Lactate/malate dehydrogenase, N-terminal	IPR001236	-	-
Sma3	Malate dehydrogenase, active site	IPR001252	-	-
Sma3	L-lactate/malate dehydrogenase	IPR001557	-	-
Sma3	Hydroxymethylglutaryl-CoA reductase, class I/II	IPR002202	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Malate dehydrogenase, type 2	IPR010945	-	-
Sma3	Malate dehydrogenase, NAD-dependent, cytosolic	IPR011274	-	-
Sma3	Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal	IPR015955	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Protein kinase, C-terminal	IPR017892	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G08720.1	ATPK19, ATS6K2, S6K2, ATPK2 serine/threonine protein kinase 2 chr3:2648625-2650407 REVERSE LENGTH=471	3.0e-37	61%
RefSeq	Arabidopsis thaliana	NP_850543.1	serine/threonine protein kinase 2 [Arabidopsis thaliana]	3.0e-37	61%
RefSeq	Populus trichocarpa	XP_002318010.1	predicted protein [Populus trichocarpa]	0.0	72%

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
537		87		12	0.992554
690	33		66		0.997455
730		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain