SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene126749

Length: 1089 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene126749

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cinnamoyl-CoA reductase-like protein [Arabidopsis thaliana]	-	-	1.0e-27	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%

Source	Gene names
Sma3	AT4g30470; At2g23910; At4g29310; At4g30470; GSVIVT00015022001; GSVIVT00016640001; GSVIVT00017112001; PHYPADRAFT_122687; PHYPADRAFT_175784; POPTRDRAFT_551729; POPTRDRAFT_558970; POPTRDRAFT_590025; POPTRDRAFT_825925; POPTRDRAFT_832029; RCOM_0048650; RCOM_10

Source	GOs	Term	Type	Identity
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	coenzyme binding	GO:0050662	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	cellular metabolic process	GO:0044237	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	-
Sma3	Protein of unknown function DUF1005	IPR010410	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G30470.1	NAD(P)-binding Rossmann-fold superfamily protein chr4:14894263-14896506 FORWARD LENGTH=303	2.0e-33	54%
RefSeq	Arabidopsis thaliana	NP_194776.1	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]	3.0e-33	54%
RefSeq	Populus trichocarpa	XP_002301131.1	predicted protein [Populus trichocarpa]	1.0e-35	56%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NL44

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 247 - 314

Fln protein: TSASLERWGKA*PKVCFPV*RRARVQSAGLADSGQYSATAASLTATGILDHDRSNVTQVIGAG*APAVVVGREI*GYGKDGWL*YMIFLGLQLKLHQW*LLLFLQLVQIGLTTLIVGPGITMVTINASLIVGPSITYKSSGSTIAYLKGAAQIYEKGTLASVDISFLADAHICAYEDPSAYGRYICFNQIVSKAEDAVNLAQSLRHLIPFPDRFEDSTVYQQRLSNKKLTGLMVGYGNRATLSSEL*

Protein Length: 248

Fln nts: ACTTCAGCTTCACTTGAACGTTGGGGCAAAGCCTGACCCAAGGTTTGTTTTCCAGTTTGACGGCGAGCCCGAGTGCAGTCCGCAGGTCTTGCAGATTCAGGGCAATATTCGGCAACAGCTGCAAGTTTAACCGCGACAGGAATTCTAGATCACGATCGATCAAATGTGACTCAAGTAATAGGGGCTGGTTAAGCTCCTGCAGTAGTAGTCGGGAGAGAGATATAAGGGTATGGAAAGGATGGTTGGTTATGATACATGATCTTTCTGGGTCTCCAGTTGAAGCTGCATCAATGGTAACTCCTTTTGTTCCTTCAGTTGGTACAGATAGGGTTAACCACTCTAATTGTAGGACCTGGCATCACAATGGTGACAATCAACGCATCTCTGATTGTAGGACCTAGCATCACATACAAAAGCTCAGGATCTACCATTGCATATCTTAAAGGGGCTGCACAAATATATGAGAAGGGCACTTTAGCTAGTGTGGACATAAGTTTTCTAGCGGATGCACATATATGTGCTTATGAAGATCCATCTGCCTATGGGAGGTATATTTGTTTCAATCAAATAGTTAGTAAGGCAGAGGATGCTGTCAATTTAGCACAGAGCTTGCGTCATCTGATACCGTTCCCTGATAGATTTGAAGACTCAACCGTCTACCAACAACGTCTGAGTAATAAGAAGTTGACTGGATTGATGGTTGGATATGGAAATCGTGCAACCTTAAGCAGCGAACTGTAA___GGGACGGGGGGCGGCTTTTCCCCATGTTTACAGCTCATCAGCAGCCATGAATGAGGGGCACAAGAAAACTTGGGGAGATTACATGTTCAGACTACATGCATTATTGTACATCATGTAATATAATTTTCCCTTTTAAGTTCGTTGGAATGTTGGCAATAAGTCGATTTTCTTCACGACGAGCATTAAAGTCTCAACCTTCATTTGATAGTTGGCAACAGCCCTAAGTCGATTTCCATAACGACCAGCAATGAAGTTTTAGCTTGTCACTAAGACTTTCAACCATGCGCATTTTTTTGTTTATTGCTGAAGTAAAATCTATTTCCTGCGTTCTTGCAAAAGTGCAACATT

Fln Alignment:

AllPine_a_rep_c65642___LIVGPGITMVTINASLIVGPSITYKSSGSTIAYLKGAAQIYEKGTLASVDISFLADAHICAYEDPSAYGRYICFNQIVSKAEDAVNLAQSLRHLIPFPDRFEDSTVYQQRLSNKKLTGLMVGYGNRATLSSEL
A9NL44________________LAMDRGLNMVTINASLIVGPGITYKSSGSTIAYLKGAAQMYEKGTLSSVDIRFLADAHICAYEDPSAYGRYICFNQIVSNAEDVANLAQSLRHLVPFPDRFEDSTVHQQRLSNKKLTGLMVGFGNRATLSSEL

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
706		66		33	0.997452
833	16		83		0.994512
834	83		16		0.994512
1023		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain